RNA id: TU289901


Basic Information

Item Value
RNA id TU289901
length 259
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G254447
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38602358 ~ 38602616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttgcttaccgcccaaataggtccacagacgatgcaatctcaaccacactgcacactgccctaacccatctggacaagaggaatacctatgtgagaatgctgttcatcgactacagctcggcattcaacaccatagtaccctccaagctcgtcttcaagctcgagaccctgggtctcgaccccgccctgtgcaactgggtactggacttcctgacgggccgcccccaggtggtgagggtaggcaacaacatctcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289792 lncRNA upstream 136466 38465619 ~ 38465892 (+) True G254343
TU289663 lncRNA upstream 138570 38463356 ~ 38463788 (+) True G254219
TU289591 lncRNA upstream 236897 38365258 ~ 38365461 (+) True G254148
TU289589 lncRNA upstream 240444 38361678 ~ 38361914 (+) True G254146
TU289587 lncRNA upstream 242810 38359326 ~ 38359548 (+) True G254144
TU290019 lncRNA downstream 10011 38612627 ~ 38612843 (+) True G254562
TU290049 lncRNA downstream 16417 38619033 ~ 38619264 (+) True G254583
TU290055 lncRNA downstream 21325 38623941 ~ 38624149 (+) True G254589
TU290036 lncRNA downstream 158092 38760708 ~ 38764081 (+) True G254570
TU290224 lncRNA downstream 161721 38764337 ~ 38764657 (+) True G254735
XM_021596833.2 mRNA upstream 352336 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA upstream 352336 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA upstream 352336 38234343 ~ 38250022 (+) True LOC110519944
XM_021596828.2 mRNA upstream 846906 37748695 ~ 37755452 (+) False LOC110519942
XM_021596827.2 mRNA upstream 910460 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_036974005.1 mRNA downstream 33330 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA downstream 43680 38646296 ~ 38760490 (+) False LOC110519946
XM_036974006.1 mRNA downstream 43681 38646297 ~ 38760490 (+) False LOC110519946
XM_036974017.1 mRNA downstream 43681 38646297 ~ 38760490 (+) False LOC110519946
XM_036974007.1 mRNA downstream 43682 38646298 ~ 38760490 (+) False LOC110519946
TU289899 other upstream 1492 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 160624 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 509624 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 875020 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 1974816 36623610 ~ 36627542 (+) True G251845
TU290310 other downstream 240894 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 1056443 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1837453 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1837453 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 5649453 44252069 ~ 44252551 (+) True G261749

Expression Profile