RNA id: TU289792


Basic Information

Item Value
RNA id TU289792
length 274
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G254343
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38465619 ~ 38465892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagaaacatggcaaaccttgtttataatcaattctcaaggtgtttttcaaatatctattcgataatatatccatcgggacaattcgtttttcagtaggaccgattggagtaatggctacctctgtattttatgcgagaatctctctgggagcatcaggtgaccacttgcgcaatgtagcttacgggtattcttcaacataaatgcgtaaaactacgtcacaatgctgtaggcACCTTcaggaatacggagaaagagtaatctggttgatagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289663 lncRNA upstream 1831 38463356 ~ 38463788 (+) True G254219
TU289591 lncRNA upstream 100158 38365258 ~ 38365461 (+) True G254148
TU289589 lncRNA upstream 103705 38361678 ~ 38361914 (+) True G254146
TU289587 lncRNA upstream 106071 38359326 ~ 38359548 (+) True G254144
TU289584 lncRNA upstream 108522 38356879 ~ 38357097 (+) True G254141
TU289901 lncRNA downstream 136466 38602358 ~ 38602616 (+) True G254447
TU290019 lncRNA downstream 146735 38612627 ~ 38612843 (+) True G254562
TU290049 lncRNA downstream 153141 38619033 ~ 38619264 (+) True G254583
TU290055 lncRNA downstream 158049 38623941 ~ 38624149 (+) True G254589
TU290036 lncRNA downstream 294816 38760708 ~ 38764081 (+) True G254570
XM_021596833.2 mRNA upstream 215597 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA upstream 215597 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA upstream 215597 38234343 ~ 38250022 (+) True LOC110519944
XM_021596828.2 mRNA upstream 710167 37748695 ~ 37755452 (+) False LOC110519942
XM_021596827.2 mRNA upstream 773721 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_036974005.1 mRNA downstream 170054 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA downstream 180404 38646296 ~ 38760490 (+) False LOC110519946
XM_036974006.1 mRNA downstream 180405 38646297 ~ 38760490 (+) False LOC110519946
XM_036974017.1 mRNA downstream 180405 38646297 ~ 38760490 (+) False LOC110519946
XM_036974007.1 mRNA downstream 180406 38646298 ~ 38760490 (+) False LOC110519946
TU289648 other upstream 23885 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 372885 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 738281 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 1838077 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 1940446 36511574 ~ 36525173 (+) True G251773
TU289899 other downstream 134595 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 377618 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 1193167 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1974177 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1974177 40440069 ~ 40452180 (+) True LOC110519969

Expression Profile