RNA id: TU290036


Basic Information

Item Value
RNA id TU290036
length 3374
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G254570
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38760708 ~ 38764081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaggaagtgggtattttcaattgaatgcctatagagTATCTAATGGGTTTTAGaacccagattgcagttcatatggcttccaccagatgtcaacagtctgaagacattgtttcaggcttgttttctgaaaaatgaagaagaatgagacctttctCTCAGTGGACTGTATAATCAAGCTGGTTTTGCGCATGACCGAGTGTgccccttcgttgtttttcctttctattgaatacgctattgtccggttgaaatattatcgattatttagacaattgacaacctgaggattaattttaaacatcgtttgacatgtttcgacgaactttaccggtactattaggaagtatatgtctgcatgttttgagccagtggatttgaGCCAAATTTGAGCCagcctttgagccagtggattactgaacaaaacgctcCAACAAAACTGGGTTTTTGGGATAAAAAGagggactttatggaacaaaacaaatgTTTATTGTGTacctgggactcttgtgactgcaaccatatgaagatcttcaaaggtacgTGATTAATTTACATACCTGAAGGTCACTTTTCGGCATTTGCTGTATGATCGATGAGAATCTCCATATTGGAAATGTACGGTCGCTTACTAGACATCCGCAAATGTTTCAAAAATTTGCCGACGGCGGCGGGCCGTGCACCGGGGCCAGATCTTCCGGGAAGTCATCGAACGAAGTCTCTCTGACATTTGGTTTCCGTTTTATAACAATgttggtcatttttccgctgtcccggtAAATTCCACCAGATGGCGAATGGAATCTTatggcaaatgtacaaaacatcaccaattACGACATGGCCATTTCTCCTAAATGGAAAAGACTTCAAAGACGAAACTCGGTAAGCATAGGTTTTGAACTAATGGAAACAAGATGGCGATGAGGCCCAACGATTTTTCAGTTAAGGCCAAAATTTTGGGATttaaggtgaaaaaaaaaatagagCTATAATTTGAAGAGAGCGCTACATGAACGTACGCTGTCAggaaaaagaaccagccatttatctatcgtaatttaagagaaatcgtacaatgtacAATTGGTGTTGTTCAAAGaaatttgttttttttccccaaaaaaagttacagatccagttgtgACGTGTTCAGACGAATCCGTTAAGGTGGGTTTCGGAGATTTCTGTGAATTTCTGTGATTATCTGAaatcacacacactcattcaaccctctgtaaatcagtcagttcttaacataaagactcaAAACCCACAATTATGTAAGAGCCTACCCCAAGAAGGATATGTTTTATCTTTCAGCTTCCAGTGTCATCCAGAAGTGCCTTAAATTGGGGtcataggggctgtttcgaagggttaaaaatgtcagatctttccaaaacttcatatgtgtgattagacAACAATGAACTGtaaaatcagtcatttctcccaacagatgttcTTCTTTCAAAGAAagaactctcacacacacacacacagacacacacacacacacacacacacacacacatgaaataGGGGGCGCCCCTGGTCATTTTGGACTTTTTtcaatacaaaaacaaacaaCTGAGTCCCACTTCTCCCTCATCATCATGACCAATAGACCATCTAGGTTGATTCATGGCTTAACATAGTGCTATATATCATTTGGGCGGTATAAATgccatggttcactgacttttgggttcGGAAACCCATGGTCGTACATGGtaaatggacataacatcctgatttggcactTTCAATACTTTCATATTgtatttggacatttcttatggcatttggcaaTGGTTcattgacttttgacttcctatgatatcatattgcaaatggacaaaacatgatCCTTATGGACAAGTTTAAAAAATCTGACAATAAAATCTGACAAAAGTATGTTCAAAACAGTTGTTATACATGTATAAATGACAAAAACATCAAAAGAATTTCAAAAAACAGTCAACACTTTTTTAGGGGGTGATAAgttcttgaaaaaaaaaataataatcaaaaaTTTGCCTCTTGGGTCTTGACTTgatgtacatttgcaatatgaaatttACTGTGGAGCGCGCTCGCCATCTATTGGATTTTTGCTGTGCGACACTTGGCATTAGCCATATGACATTTGCAATAAGTTTTGAATGATATGCTTGAGTGGTATTGTACATCGTGTATATGTTTCGTAAGGTACCAATAAGTTCCCATTCATCTTTGTCCATTTCAGGAGGGTCTTCacttggttgtaaaatgtttgtatgcttttgtaagcggggcgctgtcctcagataattgcatggtatgcttttgccgtaaagccattttgaaatctgacaattaacaagaagttcatctttaaacctatgtgtaacacttgtattttttatgaatgtttattatgactatttctgtattttgaatttggctctctgcaatttccctggatgttgtcgaggtgggtcgctagcgtaACGCCTGCGCCAGAAATGTTaaaaacaaaggatccaattcgggaaagtcgtatttctGGTCGGAATGCTGGTTAGTTCCCGCCGcactgatatccaaaagttatttccggctatATGTAATAACATAAAAAACGTTCTTGGCTaataggtttcctccagacgtgacgcgtcgcattcaggccaaaaagtttaatcttggtttcatcagacaagaaaatcttgtttctaatggtctgagagtcttgttggcttccgtctggccactctaccataaatggaagacaggcctgattggtggagtactgcagagatggttgtccttctggaaggttcccccacctccacaaaggaactctggagctctgtcagagtgaccattgggtgtcacctccctgaccaaggcctttctccagTTTGGCTGGGGTCGGCCAGCTCCAGGGAAggctcttggtggttccaaacttctcccatttaagaatgatggaggccactgtgttcttggtgaccttcaatgctgcagacatttttttggtacagTTCCCGAGATTTGTGTCTCGTcagaatcctgtctcgaagctctacggacaattccttcgacctcatggcttggtttttgctctgacatgcactattaACTGTGGGACATTCtttagacaggtgtatgcctttcctaatcatgtccaatcagttgaatttaccacaggtggactccaatcaagttgtagaaagatctcaaggatgatcaatggaaaacaggatgcaccagagtctcaaagcaaagggtctgaatacatatgtaagtgTATTTCAGTtaaatttttaaaaaacatttctaaaaacctgtttgttttgtcataatggggtattgggATTTCAGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290055 lncRNA upstream 136559 38623941 ~ 38624149 (+) True G254589
TU290049 lncRNA upstream 141444 38619033 ~ 38619264 (+) True G254583
TU290019 lncRNA upstream 147865 38612627 ~ 38612843 (+) True G254562
TU289901 lncRNA upstream 158092 38602358 ~ 38602616 (+) True G254447
TU289792 lncRNA upstream 294816 38465619 ~ 38465892 (+) True G254343
TU290224 lncRNA downstream 256 38764337 ~ 38764657 (+) True G254735
TU290225 lncRNA downstream 780 38764861 ~ 38765123 (+) True G254736
TU290230 lncRNA downstream 4176 38768257 ~ 38768462 (+) True G254741
TU290232 lncRNA downstream 4784 38768865 ~ 38769176 (+) True G254743
TU290240 lncRNA downstream 9453 38773534 ~ 38774940 (+) True G254751
XM_036974005.1 mRNA upstream 218 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA upstream 218 38646296 ~ 38760490 (+) False LOC110519946
XM_036974006.1 mRNA upstream 218 38646297 ~ 38760490 (+) False LOC110519946
XM_036974017.1 mRNA upstream 218 38646297 ~ 38760490 (+) False LOC110519946
XM_036974007.1 mRNA upstream 218 38646298 ~ 38760490 (+) False LOC110519946
XM_021596859.2 mRNA downstream 407816 39171897 ~ 39214104 (+) False LOC110519950
trnaf-gaa mRNA downstream 629560 39393641 ~ 39393713 (+) True trnaf-gaa
XM_021596867.2 mRNA downstream 844088 39608169 ~ 39621078 (+) False LOC110519956
XM_021596866.2 mRNA downstream 844089 39608170 ~ 39621078 (+) True LOC110519956
XM_021596874.2 mRNA downstream 894672 39658753 ~ 39668297 (+) False LOC110519960
TU289899 other upstream 159842 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 318974 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 667974 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 1033370 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 2133166 36623610 ~ 36627542 (+) True G251845
TU290310 other downstream 79429 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 894978 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1675988 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1675988 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 5487988 44252069 ~ 44252551 (+) True G261749

Expression Profile