RNA id: TU290240


Basic Information

Item Value
RNA id TU290240
length 1407
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G254751
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38773534 ~ 38774940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAGGTGCAGAGCGTTTGATTTGAATGCAATCAAATCAAACGCTCTGCACCTTATTGTGACGTTTTACTAATAACAACCTATTAGGTGTAGTTGTCACCCCCAGCTCCGCTAAAACCATTGGCAACTGTGTGCCGTTTTCAAGGGATCGTTAAATAAATGTCAACTATTTGATTGTAATAACGTTACTTCTTGAAGAGCGTagtcagaactacacatttcAAATTATTCCATGCAAAACAATTACACACATGTATCTcgatcatcagagttatacagcaagtaactgcatgcttttcatgatcagtaaaTAATCAGAACTGTGTAGTTCTGACTAACTTCTTCAAGAGCTGGGGGTTTCCTGTCCATTTTTATTGTGCTTATAACAAAATGCCTGAAGGAATTTATGGAAACTATTACAAATATGGCATTGAAAAATACAATGTTCAGACTGGTATGTTCACAATATTGGGTTATAGAGAAAAAATATTCTACGTGCTGAGGTATAAGTGGTTTAAGTGGCCTTTAATTTCCCTGCACTCTACGTGTGGAATTATCTACAATAGACTTTAAAATTGGCGGAATTGGTGCCTACAAGGAATTTCAGATGGTTGTTTTTATTGAACCTTAGTTagttaggcaagtcagttaagaacaaattattatttacgctgggccaattgagagccgccctatgtgactcccaatcacggccggttcagcctggattcgaatcaggatgtctgtagtgacgcctcaagcactgagataaagtgccttagaccgctgcgccactcggggacctttttactgaagaatgtctgtttttttatgaTTTACGGGTATTTTattgtgtatatgaatgtgtagtTTAATGTGCTCATTGTATTTTGGGGCTCATCtggaaaagagaccttggtctcagcattgactctctGTCAAAATAAAGAATCAATAAAAATAAACCATTTCTTTGGGGACTGTGGTCTAAATACCCAGCATCACTTTCTACTCCACCCATTCCAATAGACCAACAGCATAGCAGCGCCCTTCGAACAGTTAcgtgccttgatcaagggcacaaTGGCAGTAGGTGTCACCTGGGATGTAATATCATATGCAGTGctttcaaaaagtattcatacccttgacttattccatattctgttgtgttacagcctgaattcaaaatggattaaagatttttttctcacccatctaccttCAATACTCCATAATGCaaagtttttagacatttttgaaaatgtattgaaaatgaaataaagagATATAAGATGTTTTCACAAccatgagtcaatactttgtagaagcacatttTGCATCGATTACAGCTGTGGGTCTTTCTGGGCAAGTCTCTAAGAGCTCTCCACACCTGCATTGTTCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290232 lncRNA upstream 4358 38768865 ~ 38769176 (+) True G254743
TU290230 lncRNA upstream 5072 38768257 ~ 38768462 (+) True G254741
TU290225 lncRNA upstream 8411 38764861 ~ 38765123 (+) True G254736
TU290224 lncRNA upstream 8877 38764337 ~ 38764657 (+) True G254735
TU290036 lncRNA upstream 9453 38760708 ~ 38764081 (+) True G254570
TU290251 lncRNA downstream 5182 38780122 ~ 38780346 (+) True G254758
TU290262 lncRNA downstream 18854 38793794 ~ 38793997 (+) True G254769
TU290263 lncRNA downstream 19849 38794789 ~ 38795057 (+) True G254770
TU290308 lncRNA downstream 86803 38861743 ~ 38862237 (+) True G254814
TU290348 lncRNA downstream 128806 38903746 ~ 38904270 (+) True G254848
XM_036974012.1 mRNA upstream 13044 38646298 ~ 38760490 (+) False LOC110519946
XM_021596859.2 mRNA downstream 396957 39171897 ~ 39214104 (+) False LOC110519950
trnaf-gaa mRNA downstream 618701 39393641 ~ 39393713 (+) True trnaf-gaa
XM_021596867.2 mRNA downstream 833229 39608169 ~ 39621078 (+) False LOC110519956
XM_021596866.2 mRNA downstream 833230 39608170 ~ 39621078 (+) True LOC110519956
XM_021596874.2 mRNA downstream 883813 39658753 ~ 39668297 (+) False LOC110519960
TU289899 other upstream 172668 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 331800 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 680800 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 1046196 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 2145992 36623610 ~ 36627542 (+) True G251845
TU290310 other downstream 68570 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 884119 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1665129 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1665129 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 5477129 44252069 ~ 44252551 (+) True G261749

Expression Profile