RNA id: TU290251



Basic Information


Item Value
RNA id TU290251
length 225
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G254758
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38780122 ~ 38780346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaaaaatataaacgtaattAAAAAGTAAAGTGTGGATGGAAGCAATTCCCTtcttcacagaagagtggaggctgtagcACAGTTTAGAAAgaaaattacagactcctctactttccggctacccagatagagcactaaataaacttcagttagtgctaaatacggctgctagaatcctgactagaaccaaaaaattggatcatattagtccagtgctagcctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU290240 lncRNA upstream 5182 38773534 ~ 38774940 (+) True G254751
TU290232 lncRNA upstream 10946 38768865 ~ 38769176 (+) True G254743
TU290230 lncRNA upstream 11660 38768257 ~ 38768462 (+) True G254741
TU290225 lncRNA upstream 14999 38764861 ~ 38765123 (+) True G254736
TU290224 lncRNA upstream 15465 38764337 ~ 38764657 (+) True G254735
TU290262 lncRNA downstream 13448 38793794 ~ 38793997 (+) True G254769
TU290263 lncRNA downstream 14443 38794789 ~ 38795057 (+) True G254770
TU290308 lncRNA downstream 81397 38861743 ~ 38862237 (+) True G254814
TU290348 lncRNA downstream 123400 38903746 ~ 38904270 (+) True G254848
TU290433 lncRNA downstream 198630 38978976 ~ 39057441 (+) True G254926
XM_036974012.1 mRNA upstream 19632 38646298 ~ 38760490 (+) False LOC110519946
XM_021596859.2 mRNA downstream 391551 39171897 ~ 39214104 (+) False LOC110519950
trnaf-gaa mRNA downstream 613295 39393641 ~ 39393713 (+) True trnaf-gaa
XM_021596867.2 mRNA downstream 827823 39608169 ~ 39621078 (+) False LOC110519956
XM_021596866.2 mRNA downstream 827824 39608170 ~ 39621078 (+) True LOC110519956
XM_021596874.2 mRNA downstream 878407 39658753 ~ 39668297 (+) False LOC110519960
TU289899 other upstream 179256 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 338388 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 687388 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 1052784 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 2152580 36623610 ~ 36627542 (+) True G251845
TU290310 other downstream 63164 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 878713 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1659723 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1659723 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 5471723 44252069 ~ 44252551 (+) True G261749

Expression Profile