RNA id: XM_036974012.1


Basic Information

Item Value
RNA id XM_036974012.1
length 6274
RNA type mRNA
GC content 0.55
exon number 28
gene id LOC110519946
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38635946 ~ 38760490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taCCCGCCCCTTTCTCAGTTATCCCCGGTGGTGTGCACTTTGGATATGCAGCAGTGAAGTGTGGAACTGTTGCTTGTCAAGTCTGCCAGAGAATGCCTGAGTCATTATTGACGGTGACTCTAAAGTTGGAaaaccttctctctccctgtctgtctctcagtcagtctgtttgtctatctgtctctccatAGGACAACTTCAACGTCTTCCTTCCTGTGGGAAGCTCTGACTAAAGGAGGCACAGCTCTTTCACGCAGGAGACCTCCAAGACACATCCACTAAAGCCACTGTCAAGTGCTGATCTCCAAATCCTGGCTGGGTAGGAAGGCACAAAGTGAAACTTTCTATAATAGACCTAACCTAAACCTCAAGGCCTTCGAACGACTACTGGGCATAGCAGCAATATCCAAGGTTGTGGGAGTGACGCGGAGGTGGACTCAGTCTTCAGGATGGCGGTGGACAGTAACAAGGATTCGCTGCACTACCGCCGCTCGTTGGTCATCGCACCCAAAACGACCACACAGTTCAACCAGTTCCTGCCCACCAAGGACAAGCCAGCGGCCTACGTGCCAGCACCTCTCCGCAAGAAGCGGGCCGAGCGCCACGAGGACAGCCGCCGAAGCTGGGCCAGCCCCAAGTACACTGAGGAGGATGGCACCTTCACCAGGTCCGAATCCTCCAACAACAGATGCATATCCCAGGATTCCCTGCCCACCGTCCAACTGCAGTGGGCGTACGAGTACGAGAGTGGCAGTGGCGATGATTCTGACCCCGAGCGGCCGGACCCCGACCTCGTTCTGGATGACCTGGCCAGCCGGCGCTTCCACAGTCCCTCCCCTGCCCTGCCTACCAACTTCGCACTACCAATCAGCCCTGTGGAGGCCGGGAATGCTGTGGGattaggaggagggggaggagtggttTCAGTGGCGAAAGGAGGGACCTGGCCAATGGTCACAATGACCACAAACACAAACGCCCCACCGCGGCAGACGGTGACCTGCCTCAGCAGCAGTGGGCCAATGACGCCGATGTGCTCCCCCCAGCCTCAGATGGGCTCAGTCAGGGTGGACCACCACTGTCCTCTCCCCACTGACAGCCTTCTCCGACAGATGTATGACGATTCTGAAGACGAGGAAGATGATGTTGGGTATGCTGACCCCATTCAGGACGACCTGTACGCTCGCAAAGTGGGTGCGTTGCCCAAGTCAACTGTCGACGTGTCATATGACCGGTTTCTGCCCAAGTTCTGGACGCCTGAGGAGGACACCCACGTGCAGAAGATCAAACTGGGCTCCCAGAGGAGACCCTGGTACAAGAAGATCCAGGGCTTCAGCCGAAAGAAGTCTGGCGGCTCATCCTCTGACGACTCTGACTGCGATGTCAGTCGCTGGCTCTCCTCAGCCCCTTCcggcccctccccctcctctcacccccatGCACCTGAAGGCTCCGCCCACACCAGCCTCCCTGCTGGTCAAAGtcCTTACAACACTCAGCCACAACACACTGCCCTCTACCAGCCCCCCAAAAAGCAAGCCACCAACATCCCATACTTTGAGCGCTTCCCGGTGGTATTCCCTATGATCGACCCCACCTCCGGCCCCCGGCTGGTCAAATGCGAGAAGTGTCCCCTTCTGGGGCGTGACAACCCCCTGGATCCACCAGAACAGTTGGATGAGTCCCTGGCAAGCATCTTCCCTGACCTGGAGAATGACGACATGTTCGCCCGACGCACCCAGGCCTTCCACTCCAACTCGGCGCTGGCTGTGCTGAAAACCCGGGTGTGCGTAAACCACTTGTCCAGCCACCTCTACGCCTCGAACGCCCAGCTCAACATCGCCACCCAGCCGCAGACACCAGGCAAGGATCACAAGACCGTCATCCCCGACATCGAGAGGGACGACTTCATCTTTCGGAAGGTCAACCAGCCCCAGGATGGTCGGCGGCAGAGACCACTGTTGGGTGCGGCCGACAGCTACAACCCGATGACCATCCCTGAGCCCTGGGCACTGCCTGCCAAGCTCCAGGCACGGCTGCTCTGCGCCCCCTCACCTTTGACCCAGGAGGTTGAAGCTGAGGGCAGGGAGAACCATGAGGAAAGAGGAGATCGTGATGGGCACCCTAAAACGGACGACATGTTGCTGAGGAAGTTTGGGATAGTGCtcggggtgggggtgggggcagTGCGTGTCCAAGGTCAGCGGTCATATCTAGGTATGTCGCTGCCCACTTCCTGTAGCGAGGGTGACCTGCAGAAGATGGTGGCGATTAGGGAGGCGAGTCGGCTGAGGTACAAGAAGAGGATGATGATTGAGAGACTGCTCCAAAAGTATGACGTTGCTAACGATGGGAGCAAATCAATGACAGACCTTGCGGTTGACCAGGAGGCCCTAAAGCAGGTGCGCTACGAGGAGCTACAGAAGATCAGAGAGCAGGTCAGGGAGAACGAAGACCAGTGGCAGGATGATCTCACCAAGTGGAAAAACCGTCGCAAGAGCTTCAACTCTGATATTgtgaagaagaaagaggagagggagcagaCCACAGCGAGCAGCGGAATAGGGAGCCGCGGTTTCCAGAATTCCAATTGGAGCTCCATCGGCAGTCGCCTCAACTCCCTCACCTCTCTGGACCAGGACGTGTTTGAAGACTCTGCCCCGGTCCTCCGCACCCTCCCTCCGAGGAGCTACACCTTCGACAACCCCTACACCCCTCTTGACCGCCTCAGACCAACTCGCTCCTCCGTGCTCCCCCCAAGGGAGGAGGCGTGCGCTGCCACCACGGCAACCAACAAGGCTGTCCCGCCTTCTAGGGGCAACATGAGTGACAGTATCGACAGTCCCTTCGGTTCTGGTAGCGACATCACTACCACTGTGGGTCGCACCCCCAACTACAACCCCTACGTTCCAGCCCCGAATCCTTCAGAAAGAGCCCCAAGCCTGGCCTCACGGTACACCAGTGCAGCCAAGACGGAGGAGACcttcagcaccaccaccacccccagccTACTACCCAAAGCTCATGAGCCCAGTCGCCCATGGGTGGGGAAGGTGTCTGAAGAAGTGACCCCATCCACTGGTGGTGGCTCTCTGTACATACAACAGCCACAGTACAACTCGGTGGTGATGGACCCACAGCCCGTGCCTCCTGGTGTGTCTCGGgtttctgcctctctccccagGAGCTACATGAGATCGGACAGCGCTCGGCTCAACTCTGTCTTCATGCCAAGGCCCTTCGGGAGCCAGTCTACAAGCGTCGCATCACTGCCACCCGCCTACACCgctcCTCTGATGGCTGACTCTCAGAAAAGTGTGAACGGAGAGACGGATTTCACCAAGAAGCTGTCGGCCCCCAGCCGCTATATCCAGGTCATGACCTCTGAGGATAAGGCGCACTCCCTCTCCAGCTCTGCCCACAGcagtggagaagaagaagaagaagaagaagaaaggggTGTGACCCCCACACTTGCCACAACACTTGTCCCTACCCTGGCCCCTTCTCCTGTCCCTTCTCAGGCCAGGAGTCCTTCACCCGCCCTCCAGACCCCAAAAGTGGCCTACACAGCCCCAGTCAGTCCGTTACCTACAAAAGACCAGgagAGCTACGCTGACATGCGGATCAGTCTCAACCAGAAGTCCAACAGCAGTCGAGACTTTGGCTTCCAGACAGAGTGGGACTCCACTGGAGCACACGTCACCTCcatccaacCAGGCAGCCCAGCCGAGCTGTGCCAACTGCAGGTGGGCGACGAGGTGATGTCGGTGAGCGGGCAAAGGGTGGCAGAGATGAGCTACGGCAAGTGGAAGAGCAGCACAGAGCAAGCTCTGCAGCAGGGAAGCCTTACCATGGACATACGTCGTCACGGCAGGAACAACTGGGACAGAGACCTACCTTCCCTGCCGTTTAAAAGCCATAAGACCATCAATCTGACCAGTATGGATCATCATCCAACAGTTATAGGTTTCCCCGACACAACCACCGTTAACGCAACCACCAGCTTGGATTTCACCTCTCGGGGATCCATGGAAACCACCAAGAAGGTCACTACCCAACCAATCATTGATGTAGCATCCAATGGAGTGAATGGAGGCTTCCGTGACGAAACAGTGACCGTGAGAAACAAAGAACCCATATCCATGAAAAATTTAAAACGGAGGTCAGAGTTTTTTGAACAAGGAGGATCAGAGTCAGCAAAATCAGATatGCCCGTTGCCTCCATCGCTCCCTCCTCTAACCGCTTGTCCTGTGACCCGGAGGAGGAGCGCAGGAGGCAGGAGAAATGGCAGAAGGAGCAGGAGAGACTGCTACAGGAGAAATACCGTCGTGACCAGGAGAAATTGGAGGAGGAGTGGCGTCGGGCCCAGCAAGAGGCTATGACAGAAGGGGGAAGACACCACCAAGAGCAGCCGAGGGGCCTGGAGACGGACAGCAGGAGTATcagccccctctcccccctccgccAGCCTACCATGCCCTGGGAGGAcgaaagggggaggagggtagaggaggaagcacagagaagacaggaggaggaagagaggaggagagtggaggagcggCAAaagtgggaggaggggaggaggaaggaggagaaggagcaaGAGCTGCTGCGTCttcaggaggagaggaagaggagggagaagcaggaggatgaggagaggagacggagggaaaaggaggagctGAGATGGCAGAGGGAGAAGGGGCGCCAGGAGGCTGCTGAACAACaacacaaggagagagagaaaatgcaggagcagcagcagcaatgGGTCGGGGACTCCTATGGCTATGCCAAGGCCCAGTCTGAGATATCCATAGCAGacagGGCAAAGTCGAAATCTACTCCAGAGCTGGACAACGTGGAGAAAACTAAAGTGACTAGCAGCTGTGGGATGGGCGAAGAATTGGGGAGGAAGGGCCAGCAGAGCGTACCCCAGGCGGAGCTGGAGAGGCAGCAGATCCTTCAGGAGATGAAGAAGAAGACCAACCTAGCCACAGACAACAGCTGGATCCGCCAACGCTCCACCAGCACCACCAACAGCAAGGACCCCACTGCCAGCCCCATCAGGAGAGGCGAGTCTCTGGACAACCTGGACACCGCGCCCCGTTCTTCCTGGCGCTCGTCATGGACACCAGGAAGCACCTcgtccatccccaactacagcCGGCCTCATTTAGCCCTTTCTGGCCTCAAAACTACATCCTCCTATAGTGGTGTTGCCTACGGTGGTGGTGGCTATGGCAGCGGGGTCGGAAGTCGTCCTGGCTTAGCCAccctgccctcctccctctccatgaGCTCCCTCAGAGAGGCCAGGGGGTGTAACCTATCTTTCTGGTCCCTGCGCTCACCCTCGCCATCCCCCACCCCTTCTCTTGGCCCCGAACCCGAGTCACGCCCATGCTCACAGCAACGCAGCAGGTCAGTGAGTGGCAAGAAAATCTGTACGTTCTGTGACACGGTGCTGGGCAAGGGAGCCGCCATGATCATCGAGTCCCTGGGACTCTGCTATCATTTGACCTGTTTCAAGTGTATCGACTGTAAGTCTGACCTAGGAGGATCGGAGGCCGGAGCTGAGGTCAGAATACGTAACCGACAGCTCTACTGTAACTCCTGCTACATGCGATTCAAAACTGGACAGCCAACGTCCATGTGACAACGCTGTACTAGAGTAGATAAAGGACTACTTGACAACAACCCATGAACACTGCAACCAGCTGTAACTTCAGATGTATTAATGTGGTTTTGTGATTTGACAAAAAGCCCTGATTCTTCAATTAACAACTATCTTATTCTTTATTTCTACTGTACACTTGAGAGGGTGAGATTGACCAAAAAAAGTGAAAATGTTGATATCAACGTATTATTTTTACCAGTTGCTTGTATAAAGTAGTAGGGATGTGCATGCGCCTGCAAGTTTTAGACTTTTAGCTGAAAATAGGGTTGGAAAATTCTGAAAACTTTCCCAAATATCAGAAATCACTGGTGGAGAGCTttgggaattttgcaaccctaacgAAACAATACTGGAAATTGATTTTGGTCTTGTTCATGAGATTATTGATCCTGATTACTTCATACTTCAGAGATGTAAGAGTTTTCATGTTAGGCTGAATTTATTCTCCTTTTCACCTACAAATATTTTGGTTACAACAAGTTTGTTGATGACTGAGGTTTGTTGTTGACTCTTTATTTTTATCGATGTGCCTTTTTGGTTTGTTATGGGGGGGGAGattatttaaataaaatgtattgaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290055 lncRNA upstream 22149 38623941 ~ 38624149 (+) True G254589
TU290049 lncRNA upstream 27034 38619033 ~ 38619264 (+) True G254583
TU290019 lncRNA upstream 33455 38612627 ~ 38612843 (+) True G254562
TU289901 lncRNA upstream 43682 38602358 ~ 38602616 (+) True G254447
TU289792 lncRNA upstream 180406 38465619 ~ 38465892 (+) True G254343
TU290036 lncRNA downstream 218 38760708 ~ 38764081 (+) True G254570
TU290224 lncRNA downstream 3847 38764337 ~ 38764657 (+) True G254735
TU290225 lncRNA downstream 4371 38764861 ~ 38765123 (+) True G254736
TU290230 lncRNA downstream 7767 38768257 ~ 38768462 (+) True G254741
TU290232 lncRNA downstream 8375 38768865 ~ 38769176 (+) True G254743
XM_021596833.2 mRNA upstream 396276 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA upstream 396276 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA upstream 396276 38234343 ~ 38250022 (+) True LOC110519944
XM_021596828.2 mRNA upstream 890846 37748695 ~ 37755452 (+) False LOC110519942
XM_021596827.2 mRNA upstream 954400 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_021596859.2 mRNA downstream 411407 39171897 ~ 39214104 (+) False LOC110519950
trnaf-gaa mRNA downstream 633151 39393641 ~ 39393713 (+) True trnaf-gaa
XM_021596867.2 mRNA downstream 847679 39608169 ~ 39621078 (+) False LOC110519956
XM_021596866.2 mRNA downstream 847680 39608170 ~ 39621078 (+) True LOC110519956
XM_021596874.2 mRNA downstream 898263 39658753 ~ 39668297 (+) False LOC110519960
TU289899 other upstream 45432 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 204564 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 553564 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 918960 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 2018756 36623610 ~ 36627542 (+) True G251845
TU290310 other downstream 83020 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 898569 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1679579 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1679579 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 5491579 44252069 ~ 44252551 (+) True G261749

Expression Profile