RNA id: TU310835


Basic Information

Item Value
RNA id TU310835
length 533
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G273790
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54165442 ~ 54165974 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaggggtatattggctacatagctgattcaAGCATGTCTCAAAATACAGCACTGCCCCATTCAGACAGAAAAAAAGCTCTTGacctgacttgcttttcaaagatggctaaAAATGCACACGTTTTGTGCTaagtaggaagcaatcactcccccattgctgactagaaatgagctataactgggctaataactcacttactagcaaagaatatgaacaaatgtacaCACGTGGCGACATGCAGCTCTTGCTGTAAACACAAATTCAAAGTGAAatgcacagatccatatatggcaatggtctatttgcataaaGGGATACtccagctctgattggttatggcccaactgtatgtgtagagtatgggcctgagtcctgcctgtcaatgcaataggATCCTACTCCAATGCGCTCTGCCAACAAGAAAATCTAtttcatagtttgttttgttttggtgtGTTGCGTTGAAAGTGTCTCATATTGCGTTGATTTGATTATCATTTGCACAGTagagggaaacgttgatagtgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310815 lncRNA downstream 18610 54146010 ~ 54146832 (-) True G273770
TU310797 lncRNA downstream 53187 54112052 ~ 54112255 (-) True G273752
TU310788 lncRNA downstream 70255 54094872 ~ 54095187 (-) True G273743
TU310780 lncRNA downstream 80852 54084369 ~ 54084590 (-) True G273735
TU310776 lncRNA downstream 85452 54079779 ~ 54079990 (-) True G273731
TU310839 lncRNA upstream 3208 54169182 ~ 54169386 (-) True G273794
TU310843 lncRNA upstream 7024 54172998 ~ 54173256 (-) True G273798
TU311243 lncRNA upstream 8876 54174850 ~ 54229177 (-) True G274126
TU311250 lncRNA upstream 16580 54182554 ~ 54191653 (-) True LOC110520207
TU311321 lncRNA upstream 115608 54281582 ~ 54289271 (-) True G274198
XR_002472957.2 mRNA downstream 271654 53887126 ~ 53893788 (-) True LOC110520203
XM_021597355.2 mRNA downstream 271656 53883698 ~ 53893786 (-) False LOC110520203
XM_021597349.2 mRNA downstream 300457 53817111 ~ 53864985 (-) True rab3gap1
XM_036974578.1 mRNA downstream 418573 53671765 ~ 53746869 (-) True LOC110520198
NM_001160552.1 mRNA downstream 501464 53661100 ~ 53663978 (-) True ubxd2
XM_021597360.2 mRNA upstream 15698 54181672 ~ 54191829 (-) False LOC110520207
XR_002472958.2 mRNA upstream 259584 54425558 ~ 54429214 (-) True LOC110520212
XM_036974604.1 mRNA upstream 338090 54504064 ~ 54594080 (-) True LOC110520213
XM_021597379.2 mRNA upstream 451554 54617528 ~ 54624544 (-) True LOC110520216
XR_002472959.2 mRNA upstream 467764 54633738 ~ 54636478 (-) True LOC110520218
TU309646 other downstream 914358 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 1456626 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 2565212 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 2565544 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 2691303 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 513944 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 937520 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 1244169 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 1244169 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3104808 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile