RNA id: TCONS_00029575


Basic Information

Item Value
RNA id TCONS_00029575
length 2706
RNA type mRNA
GC content 0.43
exon number 15
gene id XLOC_015009
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42573724 ~ 42588510 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTGTGAAAGTGCCAGTCCTGCCAAATCAGACACAAATGAGTGTCTGTTCACAAACTGACGACAACTAAACTTGGGAAAGAAACAAACACCGGAATaaactatgcagaagacattagATGAGGTGTGTCTGTAATGGAAAAGGAACCTGTACTAGATCTGTGTCACCTGACGGAGGTGGAGCAAACGGTAATCCTCAATGTTTTGCTGAGAGATGCTGAACTCCGCAGCCGAGAGGAAGGTAGAGTCCGAAAGCTTCAGCAGACGGTGTCAGACCCGGTGCATCTGCGCTCACTCTCTGGTGCCTGGTTTCACGAAGAACGTTCTAAGAGATACGAGAAAGGAGGAGCTGATGTTGTTCATGCTTCTTTACGCCGTAAGAGGCGAGGAAAAGATTTACCTCTGACGGCAATATTTGATAAAGGTAATAACTCTTCTCATGTACATGAGCAGCAAGAGGAAGACAGGAATGCAGAGAGAGATTTGCAGGGAAATATGAATGAAAGAGAGGACGATAAGCATCAGGAACAGAAGGAAAGCGGACAAGAAGATGGGGAAAGTCTCATTTCTAATGCCATCACTATACCACAATCCAGGACAAGAAACGTCACAAAGAGGAATGAAATATTAGGCAGTGGCTTTGAAGACAGTGTTGAAGAGTcagaaaacaaagaaagaagaaTTTTGCCAAGCACATCACCAACTCTTCAGATTGACTCAGAGGGAGACATTGACTCAGGAAGCACTGAAATAAACTATACTAGATTTGGCTCGGTTACCAGTTTGACTTCCCATCATATGATGAATGGCAGTCTGATGAGCCTGTACAGTGTGGGGGATTTTGGGGATGTTGTCGTATCAGGACGGATCCAGTTCTCACTGCAGTATGATGTCAGGACGGAGGAGCTTTATGTGCACATAATACGCTGCCAAGATCTTGCATCAGCACGCAAAAATCGATCAGATCCATATGTTAAAGTTTACCTTCTCCCCGACAACACTTCCCGTAGTAAGAAAAAGACTGCAGTGAGGAGGAAAACATTAAATCCAGTCTACGATGAAACCATGACgTACAAAGTGCGGCGACTGGACCTCCCGGCTCGCGTGTTGAGTATGTCAGTGTGGCACATGGAGAGAATGAGGAGAAACCTCTTCCTGGGAGAGCTGGAGGTCAGGCTGGGTCAGTGGGACTGGAGCCAGAACCAGCCGACCTGGCAAAACCTTCAGCCAAGAGTTCAGTTGAGTCCGGAAGCCATCATCAGCAGAGGAACCATTCTGTTCTCAATTAAGTTTGTACCTCCTGGTTCAGAGGGACGTGGAAATCCAGCGACTGGTGAACTCCATATTTGGTTGAGAGAGATTGTCGGTTTACTTCCCACAAAACGTGGCGCACCTAACACATATGTAAAAAGTGTGGTTTTACCAGATGAGAGTGGTGTCAGCGGTCAGCAGACTCGTGTGGTCCGTGGTTCTGTCAGCCCAGTGTTCAATCACACCATGGTTTATGACGGCTTTCAGTCCAGTGACCTCATTCAGGCCTGTGCAGAGATAACAGTCTGGAACCCACATCCCTCCGGCTGTCTGGGTGGAGTCCGCCTCAGCACTGGCTCAGGCTTAAGTTACGGTCAGTCTGTTTGCTGGATGGACTCGACAGAAGATGAGATCAATGTGTGGTCAAGTGTGATTCAGAGCCCCAACAGCTGGGTGGACACTAGTCTTCCCATCAGAACCAACCTACAGCTCTGCTCTGACTGACCTTTGCTGAACCTACTCCATGAATTTGCATCACATGACTTTAGATGTGTAAAGTTTCGAGTATGACCTGTTGTACTCTACATGATTTGTGCTCTACATTCTTTTTTATATCACTTGCAGTCTGAAATAACTAGTTGTCAGAGTTCAGACTTTCACAGAAAACACAGTCTTTTGTTTATAGCTTCCATCCATTATATGGATAACAAATATGTTTGAGATTTTGAGTTGATTTTAGAGTACAGGTCTCAacctggattcctggagggccgcagctctgtacagttttgctacaaccctaatcaaacacagctgatccaactaatcaaggtgttcaagactactagagactgtGATTTGGATGGGGTTAGAGCTGAAGGCCCtcctggaattgagtttgagactattGTTTTAGAGCATCATGATGTACATGTCAAAACTCACTCACTGCCATTCACCTTTTAATAATGTAGTAATCAGTACacagtctcagaaataaaggtacgtgagctgtcactggggtggtaccctttcaaaaggtacacatttgtacttaaagggtccacaTTGGTAACTCAGAGTGTATATTAGGatataaaaattttaagaggaacacttttgtactttttaggtactgatATGTACCCTTGAAGTGTTAATGCGGACCTTTTAGATACAAATTTGtaacttttaaaaaggtaccaccccagtgacagctcgcatacctttgtTTTTGAGAGGGTAGGACAGGAATGAGACTGTCGTCCagactttattttctattttgctTGGATTTGATGCAAAATATTCCTCACTCATTTGATATGTATTACATTTTGATGAACTGTGTTGTTGTTAGATTATATATTTTAGGAGTTGTTAAATTCTTAACCTGAGAAGTTCTTAAACTGTGAATTGTAATTGTCATTTTCATGAATgttttgaataattaaat

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-439 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL1 (synaptotagmin like 1).

Ensembl:

ensembl_id ENSDART00000102583

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029570 lncRNA downstream 7179 42560842 ~ 42566545 (-) True XLOC_015007
TCONS_00029567 lncRNA downstream 18615 42554421 ~ 42555109 (-) True XLOC_015006
TCONS_00029561 lncRNA downstream 22425 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029797 lncRNA downstream 48815 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029556 lncRNA downstream 160243 42405421 ~ 42413481 (-) True XLOC_015000
TCONS_00029577 lncRNA upstream 3690 42592200 ~ 42597817 (-) True XLOC_015010
TCONS_00030337 lncRNA upstream 97396 42685906 ~ 42688192 (-) True XLOC_015014
TCONS_00029581 lncRNA upstream 254599 42843109 ~ 42844172 (-) False XLOC_015015
TCONS_00030338 lncRNA upstream 254599 42843109 ~ 42845206 (-) True XLOC_015015
TCONS_00029583 lncRNA upstream 332659 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00029571 mRNA downstream 427 42567539 ~ 42573297 (-) False XLOC_015008
TCONS_00029574 mRNA downstream 504 42569510 ~ 42573220 (-) True XLOC_015008
TCONS_00029572 mRNA downstream 505 42567541 ~ 42573219 (-) False XLOC_015008
TCONS_00029573 mRNA downstream 1895 42568157 ~ 42571829 (-) False XLOC_015008
TCONS_00029569 mRNA downstream 7165 42559766 ~ 42566559 (-) False XLOC_015007
TCONS_00029576 mRNA upstream 2640 42591150 ~ 42607451 (-) False XLOC_015010
TCONS_00029579 mRNA upstream 41025 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029582 mRNA upstream 330769 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029584 mRNA upstream 350244 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029586 mRNA upstream 408458 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029546 other downstream 400496 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1201746 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 1792453 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 1937033 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 2387461 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029578 other upstream 6758 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 89854 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 440872 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1461137 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1470482 44058992 ~ 44062532 (-) False XLOC_015032

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_01568746_01575755.mRNA True 1003 mRNA 0.50 10 CI01000054 1568746 ~ 1575755 (+)