RNA id: TCONS_00029567


Basic Information

Item Value
RNA id TCONS_00029567
length 593
lncRNA type retained_intron
GC content 0.42
exon number 2
gene id XLOC_015006
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42553029 ~ 42557556 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTACAAGGcaggatccaaatgcagatttattaGAATGTTCAGTCTGGAAAGGTTCAAACGGGGACAAACGGTAGCATGAAGATAATCCACAAGAGTAGTCGATAAAACAGGCGAATGGTCGAGGCATGcggcaaaacaaacaaataatataaacaaacaaaggtAAAAACACGGCTAGACtaaaaaagtaatgtgattttgttttgagAGATtgtgtgataataaaaatgtgcataatgGGATAGCATCaaatctttgtttgttttgtagtttgaGAAGATGGATTATCACAAAGGTTCACGGTGTGAGGTGTGGAAAACCGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCATTCAAGACTAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-35 No description available

Ensembl:

ensembl_id ENSDART00000164802

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029561 lncRNA downstream 3122 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029797 lncRNA downstream 29512 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029556 lncRNA downstream 140940 42405421 ~ 42413481 (-) True XLOC_015000
TCONS_00029545 lncRNA downstream 509147 42006531 ~ 42045274 (-) True XLOC_014993
TCONS_00030336 lncRNA downstream 823442 41723487 ~ 41730979 (-) True XLOC_014992
TCONS_00029570 lncRNA upstream 5733 42560842 ~ 42566545 (-) True XLOC_015007
TCONS_00029577 lncRNA upstream 37091 42592200 ~ 42597817 (-) True XLOC_015010
TCONS_00030337 lncRNA upstream 130797 42685906 ~ 42688192 (-) True XLOC_015014
TCONS_00029581 lncRNA upstream 288000 42843109 ~ 42844172 (-) False XLOC_015015
TCONS_00030338 lncRNA upstream 288000 42843109 ~ 42845206 (-) True XLOC_015015
TCONS_00029560 mRNA downstream 3083 42547699 ~ 42551338 (-) False XLOC_015005
TCONS_00029559 mRNA downstream 51278 42490936 ~ 42503143 (-) True XLOC_015003
TCONS_00029558 mRNA downstream 91930 42456922 ~ 42462491 (-) True XLOC_015002
TCONS_00029557 mRNA downstream 129822 42418227 ~ 42424599 (-) True XLOC_015001
TCONS_00029555 mRNA downstream 137725 42397287 ~ 42416696 (-) False XLOC_015000
TCONS_00029568 mRNA upstream 4034 42559143 ~ 42566527 (-) False XLOC_015007
TCONS_00029569 mRNA upstream 4657 42559766 ~ 42566559 (-) False XLOC_015007
TCONS_00029571 mRNA upstream 12430 42567539 ~ 42573297 (-) False XLOC_015008
TCONS_00029572 mRNA upstream 12432 42567541 ~ 42573219 (-) False XLOC_015008
TCONS_00029573 mRNA upstream 13048 42568157 ~ 42571829 (-) False XLOC_015008
TCONS_00029546 other downstream 381193 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1182443 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 1773150 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 1917730 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 2368158 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029578 other upstream 40159 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 123255 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 474273 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1494538 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1503883 44058992 ~ 44062532 (-) False XLOC_015032

Expression Profile

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