RNA id: TCONS_00029555


Basic Information

Item Value
RNA id TCONS_00029555
length 2518
RNA type mRNA
GC content 0.43
exon number 15
gene id XLOC_015000
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42397287 ~ 42416696 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTGTATACGTGAGTTTACTGATGAAAACTGCTTTATTCACCCTTTAAACAACATTGAAACCATCTGATAAATCGACTTATTCTCAGTAACAcgtagaatatatatataaaacgccAAAATGAACGTGACTCTTGCTGTGAAACAGTACATTTCCAAAATGATAGAGAGCAGCGGACCTGGGATGAAGGTGCTGCTGATGGACAAGGAGACGaCCAGTATAGTGAGCGTGGTCTACACACAGTCTGAGATCCTGCAGAAGGAAGTTTACCTTTTTGAGCGCATCGACTCACAAAACCGAGACAACATGAAGCATCTTAAGGCGATATGCTTTCTCCGCCCGACCAAGGAGAACGTAGAGCACCTGATTCAAGAGCTTCGGCGGCCCAAATATAGTGTCTATTTCATCTATTTCAGTAACGTGATCAGTAAGAGCGAAGTAAAGGCTTTGGCTGAGGCAGATGAACAGGAAGTAGTTGCAGAAGTGCAGGAATTCTATGGAGATTTCATTGCCGTGAACCCACATCTTTTCTCTCTAAACCTTCAAGGAGTATCCAGGGGTCGCAGTTGGGAGCCCAGTGTTCTTCCTCGTGTCACTCAAGGTTTGACATCAGTTCTGCTATCCCTGAAGAAATGCCCCATGATCCGCTACCAGCTCTCGTCTGACATGTCTAAAAGACTGGCGGAGAGCGTCAAACAAATCATTACTAAGGAGTACGAACTGTTTGACTTCAGAAAAACAGAAGTGCCTCCTCTTCTGCTGATTTTGGACAGAAGTGATGATGCAATCACTCCTCTTCTCAATCAGTGGACGTATCAGGCCATGGTTCATGAGTTGCTGGGCCTTAATAACAACCGCATAGACCTGTCCAGAGTGCCTGGAATCAGTAAGGACTTGCGGGAGGTGGTCTTGTCTGCTGAAAATGACGAGTTTTATGCAAATAACTTATACCTGAATTTTGGTGAGATTGGAACAAACATCAAGAACCTGATGGAggatttccagaagaaaaaacccAAGGACCAACAGAAGTTAGAGTCTATATCTGACATGAAGGCTTTTGTGGAAAACTACCCCCAGTTTAAGAAGATGTCAGGCACCGTCTCGAAGCATGTGACCGTGGTCGGAGAGCTGTCTCGTCTGGTCAGCGAACGGCAGCTGATGGAGGTGTCGGAGGTGGAGCAGGAGCTGGCCTGTCAGAATGACCACTCCAATGCACAACAGATGCTCAGGCGTCTACTGCAAAGCCCTCGTCTTTCTGAAATTGATGCTGTGCGGCTGGTGATGCTGTATGCGCTTCGCTATGAGAAACACAGCAGCAGTATTTTACCCAGCCTTATGGAGGAGCTCAACCGCAAGGGAGTGTCTGAGAGACACCGCAAGATGGTACATGCTGTGGTGGAATATGGTGGAAAACGAATCAGAGGAAGTGACCTCATCACTCCCACAGATGCTGTTTCCATTACAAAGCAGTTTTTCAAAGGACTTAAGgGAGTTGAGAATGTGTACACGCAGCATCAGCCGCTTCTTCATGACACGCTGGATCAGCTGATCAAGGGTCGTTTGAAGGACAGCCAGTTCCCATACCTCGGGCCAAGTTCACTGAGAGACAGACCTCAGGACATTATCGTCTTCATCATTGGCGGAGCTACTTACGAGGAGGCTTTGACTGTTTACAACCTGAACCGCACAATGCCAGGCGTCCGCATCGTGCTCGGgggcacacacattcacaacacTAAGAGtTTCCTGGAGGAAGTGATGCTCTCTGTGGGTTCTGGCGGTGACCGGTCTCAAATCGGAGGCCGTCAGATGAGCCGGCGCTGAACGGTGATGGAAAAGCTCATTATGTACACTCACACTCTAGTCTGAACCCTGATCTGAGCACAAGtttcctcttttctctctcctgACATTCCTTTAAAATACTCCAGATTGTTTTAGGGAAGAAAATAGTAGCACTGCACAACAAGGATTAATTTTACAGTTTCTACACTATTTAATTATCTAGGTTAATGtcttataaatataaacaattatgtaatattaataaatattctattgttatttttttaatttgtgttcattcattatgcaacatgaatttaaaaaaatagtagtGTTTGTGTTGAAAACACTGACCTAgattattaaatattgtattaCTAGTTCTTGTGTGTTAAGTAATATCAGAATAACACATATTTTAAGTGATGTGTGAAACACTGTAAATGTCATTACTTATATGACTGTgtgtaaataatgtttatatctccAGAAGTGTTCACAAtgactgcttttatttattagttcTACTGCGTTTGAGTGTTTTTTGACTGTacatatatctgtatatataacTTGGGTGACCGTGATGTGAAATGTTGCATCAAAATTGTCCAAAACAAATCTATAAAATCACTTTGCTTCAAAACCAGCTAATTGTAAAAGCTATTTTGATCTCTTTAATGCTTGGCATTTgaacagctgtacctaataaagtggccggtgagtgta

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:1902746 regulation of lens fiber cell differentiation biological_process
GO:0000139 Golgi membrane cellular_component

KEGG:

id description
ko04144 Endocytosis
ko04138 Autophagy - yeast
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060503-526 Acts upstream of or within regulation of lens fiber cell differentiation. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in severe congenital neutropenia 5. Orthologous to human VPS45 (vacuolar protein sorting 45 homolog).

Ensembl:

ensembl_id ENSDART00000086961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029545 lncRNA downstream 352013 42006531 ~ 42045274 (-) True XLOC_014993
TCONS_00030336 lncRNA downstream 666308 41723487 ~ 41730979 (-) True XLOC_014992
TCONS_00030335 lncRNA downstream 667266 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00030334 lncRNA downstream 884029 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030333 lncRNA downstream 890803 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00029797 lncRNA upstream 101881 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029561 lncRNA upstream 131957 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029567 lncRNA upstream 137725 42554421 ~ 42555109 (-) True XLOC_015006
TCONS_00029570 lncRNA upstream 144146 42560842 ~ 42566545 (-) True XLOC_015007
TCONS_00029577 lncRNA upstream 175504 42592200 ~ 42597817 (-) True XLOC_015010
TCONS_00029554 mRNA downstream 5897 42367293 ~ 42391390 (-) True XLOC_014999
TCONS_00029553 mRNA downstream 5904 42367286 ~ 42391383 (-) False XLOC_014999
TCONS_00029551 mRNA downstream 105932 42263073 ~ 42291355 (-) False XLOC_014998
TCONS_00029552 mRNA downstream 105932 42263854 ~ 42291355 (-) True XLOC_014998
TCONS_00029550 mRNA downstream 152929 42241530 ~ 42244358 (-) True XLOC_014997
TCONS_00029557 mRNA upstream 1531 42418227 ~ 42424599 (-) True XLOC_015001
TCONS_00029558 mRNA upstream 40226 42456922 ~ 42462491 (-) True XLOC_015002
TCONS_00029559 mRNA upstream 74240 42490936 ~ 42503143 (-) True XLOC_015003
TCONS_00029560 mRNA upstream 131003 42547699 ~ 42551338 (-) False XLOC_015005
TCONS_00029562 mRNA upstream 136333 42553029 ~ 42557556 (-) False XLOC_015006
TCONS_00029546 other downstream 224059 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1025309 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 1616016 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 1760596 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 2211024 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029578 other upstream 178572 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 261668 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 612686 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1632951 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1642296 44058992 ~ 44062532 (-) False XLOC_015032

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_01639395_01647833.mRNA False 2766 mRNA 0.41 15 CI01000054 1639395 ~ 1648880 (+)
bowfin (Amia calva) AMCG00012448 True 2951 mRNA 0.58 14 CM030138.1 18295215 ~ 18320973 (-)