RNA id: TCONS_00029559


Basic Information

Item Value
RNA id TCONS_00029559
length 1963
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_015003
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42490936 ~ 42503143 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTGCTGTTTTATAGGAACTTGGCGCGTGTGTGTCCTCCGTGGCGGAAACATTTCTAGATTGTCTTGTTTTCTTTCGGGACTTTCTATTGTGCAGATGAATGTTCGTCAGCATCTGTAGCGGTTGACTGTCTGGCTTCTTTAGACATGTGGTTTTTTCTAGCTGGATTCGTGCTTCTGTGTGCTGCAGATGCCACACCGGTTGCAGAGAGGACAGTTCCTGAGTTTGGAAAGACTTATCATGTCAAAGGTTTGCTTTCTTTGCCTTATGCTGAGATAAAGGAGCCATTTGAAGCTTGGTACGACCTGACGGGGAAAAGAAGTCGAATCGACTATTACCATGGTCAAGTTTGCACTTTCTTCATTGGAAATGACTTGGACTATGGTGCCGTTTACAAGATCACACCAGTCACCACTGAGACCGAATTCAATACTATGAAGTGTTTCCAGCTTAACGGCACCAAGGATGAACCAATAATTCCTCAGATAGCACTGCCTGATGTGCAAGGCTTTGAATTTGAGAAGATTGAATACTACGCAGGCGTTCTGTGCGAGGTCTGGAAAAATGTCACAACGGTTGGCCATAAGAAAAACACATACCGTCTGTGGGTCACCCGTCCAGAGGGAATAGATTCTTCAGCCATGCCGCACCACTATGAGATGATGGGCTTCAATACTCTTTTGGGCTCCCACTATGATAAATATATTGTCGATTACAGCGACTTCAGCTCTCAGGTTGATccaaacatttttaaactacCTGGAGgaatgTCCTGTGGTGGCTTTCCTGGTCCTGGTGTAGAGCATCATTTACTAGCCAATCCCATTCAAGATTTTGTAGAAACCTCCCCAGTTAGCCACGCCCACCGAATGTTTGGCCACTATAAGGAGAAGTTTAATCGTCAGTATGACAACGAGATGGAGCACGAGGAACGTGAGCACAACTTTGTGCATAATATTCGaTATGTGCACTCTATGAACAGAGCTGGCCTTTCATTCTCTCTCTCAGTCAACCACCTGGCCGATCGCTCTCAGAAAGAGCTGTCAATGATGAGAGGATGTCAAAGGACTCACAAGGTTCATAGAAAAGCCCAGCCTTTCCCCTCGGAAATCCGGTCTATAGCCACTCCAAACTCTGTAGACTGGAGACTCTACGGTGCTGTGACGCCAGTGAAAGACCAGGCTGTGTGTGGATCCTGCTGGAGCTTTGCCACCACTGGAACACTAGAGGGAGCACTTTTCCTGAAGACAGGACAGCTGACATCACTGTCCCAGCAGATGCTGGTGGACTGCACATGGGGATTTGGCAATAATGGTTGCGATGGAGGAGAGGAATGGAGAGCTTTTGAGTGGATCATGAAGCATGGTGGCATTTCTACAGCTGAGAGCTATGGAGCATACATGGGCATGAATGGTTTGTGTCATTACGATAAGACCTCCATGGTGGCTCAGTTGACTGGTTACACTAACGTGACCAGTGGTGATATTCTAGCACTGAAGGCTGCGATCTTTAAATTTGGGCCTGTAGCAGTGAGCATCGACGCTGCACACCGATCCTTCGCCTTCTACAGCAATGGAGTCTACTATGAACCAGAGTGCAAAAATGGGATAAATGACTTGGATCATGCGGTGCTGGCAGTCGGTTATGGGATAATGAACAACGAGTCCTACTGGTTAGTGAAGAACTCCTGGTCCTCTTACTGGGGCAATGATGGTTATATTCTGATGTCCATGAAAGACAACAACTGCGGTGTGGCTACTGATGCCATTTATGCCACATtagcctaaaacacacacacacacacacacacacacacacacacacacacacacacacctatcacAAGAGCCAAAAGAAGAATTACTTGTCAGTTTTATTGCAGATTTTGAATGCTGGACAGTTGATCACAGTTTTATTGTGTTTCTTTTTGAATGTCAATAAATGGAAATTCTTAATAACAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-107 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Is expressed in several structures, including optic vesicle; pigment cell; retina; vasculature; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000007642

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029556 lncRNA downstream 77455 42405421 ~ 42413481 (-) True XLOC_015000
TCONS_00029545 lncRNA downstream 445662 42006531 ~ 42045274 (-) True XLOC_014993
TCONS_00030336 lncRNA downstream 759957 41723487 ~ 41730979 (-) True XLOC_014992
TCONS_00030335 lncRNA downstream 760915 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00030334 lncRNA downstream 977678 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00029797 lncRNA upstream 15434 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029561 lncRNA upstream 45510 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029567 lncRNA upstream 51278 42554421 ~ 42555109 (-) True XLOC_015006
TCONS_00029570 lncRNA upstream 57699 42560842 ~ 42566545 (-) True XLOC_015007
TCONS_00029577 lncRNA upstream 89057 42592200 ~ 42597817 (-) True XLOC_015010
TCONS_00029558 mRNA downstream 28445 42456922 ~ 42462491 (-) True XLOC_015002
TCONS_00029557 mRNA downstream 66337 42418227 ~ 42424599 (-) True XLOC_015001
TCONS_00029555 mRNA downstream 74240 42397287 ~ 42416696 (-) False XLOC_015000
TCONS_00029554 mRNA downstream 99546 42367293 ~ 42391390 (-) True XLOC_014999
TCONS_00029553 mRNA downstream 99553 42367286 ~ 42391383 (-) False XLOC_014999
TCONS_00029560 mRNA upstream 44556 42547699 ~ 42551338 (-) False XLOC_015005
TCONS_00029562 mRNA upstream 49886 42553029 ~ 42557556 (-) False XLOC_015006
TCONS_00029563 mRNA upstream 50002 42553145 ~ 42557486 (-) False XLOC_015006
TCONS_00029564 mRNA upstream 50032 42553175 ~ 42556086 (-) False XLOC_015006
TCONS_00029565 mRNA upstream 50032 42553175 ~ 42557416 (-) False XLOC_015006
TCONS_00029546 other downstream 317708 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1118958 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 1709665 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 1854245 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 2304673 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029578 other upstream 92125 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 175221 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 526239 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1546504 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1555849 44058992 ~ 44062532 (-) False XLOC_015032

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_01589927_01595736.mRNA False 2565 mRNA 0.43 11 CI01000054 1588968 ~ 1595857 (+)
bowfin (Amia calva) AMCG00010893 True 2671 mRNA 0.50 11 CM030133.1 3442441 ~ 3450634 (-)