RNA id: TCONS_00029577


Basic Information

Item Value
RNA id TCONS_00029577
length 634
lncRNA type retained_intron
GC content 0.50
exon number 4
gene id XLOC_015010
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42591150 ~ 42607451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGGCAAAGGCTATGTGATCGCAGGAATGGACCAAGGGCTTCTGGGTGTGTGTGTTGGAGAGCGCAGAAGGATTACTATCCCACCTCATCTGGCATATGGAGAGGAGGGCACCGGAACTAAGATCCCTGGATCAGCTGTGCTGGTGTTCGATGTCCATATTATTGACTTCCACAACCCCTCTGATACAGTGGAGATCACCAGCGTGAAGCCGGAGAACTGCACTTACAACGCAAAACGTGGAGACTTTGTCAAATACCATTACAACGCCACTCTCATGGACGGCACTGACATCGGCTCCACGCACATGTATGGTAAGACGTATAATGTGGTTCTGGGATCCGGACAGGTTGTCATAGGAATGGAGCAAGGCCTTACGGGAATGTGTATCGGAGAGAAGCGCAAGCTAGTTATTCCACCTCACCTTGCATATGGAGAGAGGGGAGTGGtgtagtatcTGTGTGCTCAGATGGAGAGGTGCCTGGCAGTGCAGTGCTGGTGTTTGAGGTTGAGATGGTGGATGTGGAGGAAGGTCTTCCTGAAGGCTACATGTTTGTGTGGAATAACAACGTCACACCTGACCTCTTCAGTGAAATGGACAAGAACAAAGACGCACAAGTGGACAAAACTGAGGT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-23 Predicted to enable calcium ion binding activity and peptidyl-prolyl cis-trans isomerase activity. Orthologous to human FKBP9 (FKBP prolyl isomerase 9).

Ensembl:

ensembl_id ENSDART00000151291

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029570 lncRNA downstream 25655 42560842 ~ 42566545 (-) True XLOC_015007
TCONS_00029567 lncRNA downstream 37091 42554421 ~ 42555109 (-) True XLOC_015006
TCONS_00029561 lncRNA downstream 40901 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029797 lncRNA downstream 67291 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029556 lncRNA downstream 178719 42405421 ~ 42413481 (-) True XLOC_015000
TCONS_00030337 lncRNA upstream 88089 42685906 ~ 42688192 (-) True XLOC_015014
TCONS_00029581 lncRNA upstream 245292 42843109 ~ 42844172 (-) False XLOC_015015
TCONS_00030338 lncRNA upstream 245292 42843109 ~ 42845206 (-) True XLOC_015015
TCONS_00029583 lncRNA upstream 323352 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00029585 lncRNA upstream 364278 42962095 ~ 42983687 (-) True XLOC_015018
TCONS_00029575 mRNA downstream 3690 42573724 ~ 42588510 (-) True XLOC_015009
TCONS_00029571 mRNA downstream 18903 42567539 ~ 42573297 (-) False XLOC_015008
TCONS_00029574 mRNA downstream 18980 42569510 ~ 42573220 (-) True XLOC_015008
TCONS_00029572 mRNA downstream 18981 42567541 ~ 42573219 (-) False XLOC_015008
TCONS_00029573 mRNA downstream 20371 42568157 ~ 42571829 (-) False XLOC_015008
TCONS_00029579 mRNA upstream 31718 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029582 mRNA upstream 321462 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029584 mRNA upstream 340937 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029586 mRNA upstream 399151 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029588 mRNA upstream 615710 43213527 ~ 43226124 (-) True XLOC_015021
TCONS_00029546 other downstream 418972 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1220222 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 1810929 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 1955509 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 2405937 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029580 other upstream 80547 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 431565 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1451830 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1461175 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029620 other upstream 3357262 45955079 ~ 45960183 (-) True XLOC_015039

Expression Profile

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