RNA id: TCONS_00029585


Basic Information

Item Value
RNA id TCONS_00029585
length 505
lncRNA type antisense
GC content 0.44
exon number 2
gene id XLOC_015018
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42962095 ~ 42983687 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAcgcaagagaaagagagagagagagGCCGCTGAGGACACGACCTTATGTCAGAGGACTCTTTCTTCCCACCCTCTACACCCCAGTGAAGATCCAGCCGTATCAGCTGCTGTTTGTACAAATATCAGCAAAACGCTGGAGCGGTAACACTAAACCTCTTCCCCGGCCGTTCCTCTGAGTTGAACTTAAGTGTCTGAAACAGACAATTGTTTGAGCTTGTAGCATTTTTCCCTACAAACTGCAGCCATTAATGTCTGAATGCCAGGATTTGCACGCAATAAGGTCTGGGTTAATACAGCTGAACTCCTGAATTTTTTATAGACTGTTATCAGGGAGCAGCTGTTTTCTAGTTGAGGAGCATTAGACATCTGCTGCACAATCATTCTACTGATCAACAACAGCTTTTTAGTGTATTTGtgcataaaaattaaacaacaacattgTGCTTTTgtgaagtgtgcctcacacaggtgagtggacttgacaaaccacctgtggaTACAct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154498

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029583 lncRNA downstream 37350 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00030338 lncRNA downstream 116889 42843109 ~ 42845206 (-) True XLOC_015015
TCONS_00029581 lncRNA downstream 117923 42843109 ~ 42844172 (-) False XLOC_015015
TCONS_00030337 lncRNA downstream 273903 42685906 ~ 42688192 (-) True XLOC_015014
TCONS_00029577 lncRNA downstream 364278 42592200 ~ 42597817 (-) True XLOC_015010
TCONS_00030340 lncRNA upstream 266837 43250524 ~ 43251750 (-) False XLOC_015022
TCONS_00030339 lncRNA upstream 266837 43250524 ~ 43251750 (-) True XLOC_015022
TCONS_00030341 lncRNA upstream 288554 43272241 ~ 43282798 (-) True XLOC_015023
TCONS_00029589 lncRNA upstream 446118 43429805 ~ 43524057 (-) False XLOC_015024
TCONS_00029798 lncRNA upstream 524183 43507870 ~ 43524057 (-) False XLOC_015024
TCONS_00029584 mRNA downstream 16130 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029582 mRNA downstream 33116 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029579 mRNA downstream 310480 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029576 mRNA downstream 354644 42591150 ~ 42607451 (-) False XLOC_015010
TCONS_00029575 mRNA downstream 373585 42573724 ~ 42588510 (-) True XLOC_015009
TCONS_00029586 mRNA upstream 13281 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029588 mRNA upstream 229840 43213527 ~ 43226124 (-) True XLOC_015021
TCONS_00029590 mRNA upstream 533362 43517049 ~ 43542568 (-) True XLOC_015024
TCONS_00029591 mRNA upstream 563778 43547465 ~ 43552252 (-) True XLOC_015025
TCONS_00029592 mRNA upstream 628492 43612179 ~ 43639331 (-) False XLOC_015026
TCONS_00029580 other downstream 283615 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029578 other downstream 366711 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029546 other downstream 788867 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1590117 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 2180824 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029587 other upstream 45695 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1065960 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1075305 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029620 other upstream 2971392 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029625 other upstream 3036190 46019877 ~ 46022879 (-) False XLOC_015042

Expression Profile

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