RNA id: TCONS_00029589


Basic Information

Item Value
RNA id TCONS_00029589
length 1324
lncRNA type read_through
GC content 0.45
exon number 4
gene id XLOC_015024
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43429805 ~ 43542568 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAATCAAAGCTGGACCCACCCTGTATACTGACTTCCAGCCCATAATTACAACCTCTGACGATATGAAAATGGCACAGGCTTATTTTTCACAACcatttaaaagactttaaaaCTAAAAGCGAAGGCCTAAATTGAGTGAAGCGTTCAGGGCAGAGCAGGAAGTGATTAACGTTAGCTTTAGCAGACTGTCAACTCGCCAACCCAACTGCGGCCATTTCATTATTTACGCAAATAAAAGTGCCTTACCTGGATATACTTAAAGATTTGGCCTTAGATGCCGACGTTTTTCTGGCTTTTTAACTACCTCAGCAGTACCATTCCCTGAGTTTGGTGCCGTCCATAATTTTCTGAGCCGACAAAATGTCCACAAGTACTGTAAGAAGAGCTGTCTCGCATTTGGTAACTTTTCATTGGACGATGCGCGTTAATCCAAACATTTGATTGGCTGGTGCGCCTGTCAATCACCGAAAAATGGGCGGTTGCAGAAAGTGGAATCTTGAAGGCGCAGCTCCACCCTAGCGGCTTGAAAACATCTGTTCACAGTTTCTACACGGAAGGCAGGAATAATCAGCATTCCTGAGCCAGTCCCAACAAATCTGAAACATGGCGAAATTATGCATGGACCACCACAACATGTGATACAAGATAAAGGCTATTGGAGATGGAGCCTCACCCAAAACATAGAAAAGCATGTTTAGTAAGCGTGGAGACTCTAGACTGGAGGAATGAGTCACTGAGGAACTGCTGTGGGGGAGGCAGAGGCGGACAGTCAGACTCACTGACAAACAGAGTTCTCTCCGGGCTGGTACTGGGGCTCGGTGGCGGTGAAGTAATCCTCCAGGAAGCTCTGCAGATACTCGAATGTGTGCCTCTCATCGGGGTCTTTCCTCCAGCACTGAAGCATGAGCTCGTGCAGAGATGCCGGCGAGCCCTGCGGACACGGCATACGGTATCCGCGCTCCACCTGCTCCAGCACCTCTCGGTTGTTCATTCCTGTGCACAAACATTACACACAGAAGAAGTTTGAGtgTCAATGGCTAcctgtttccagcattcttcatcAAAATATCTCTATATTTGCatctttgagtgaactgtccctttaagcaattAACAGGGTTCCCACTCTTCCATAAAAGGAGATTCAAGGACTTCTTAAAGGATTATTCATTTCAAATCAAGCACCTTTTCAATTCACACTGCCAGCAAATACAGCATCATGAAAGTCCATGCTGCACTTAACAGTTCActtacacttcatatttacaTTGAAAGCAGCGATGATGATGTTTTGAATATGTCGTttaccaaaaatgttttaaa

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0043412 macromolecule modification biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030341 lncRNA downstream 147007 43272241 ~ 43282798 (-) True XLOC_015023
TCONS_00030340 lncRNA downstream 178055 43250524 ~ 43251750 (-) False XLOC_015022
TCONS_00030339 lncRNA downstream 178055 43250524 ~ 43251750 (-) True XLOC_015022
TCONS_00029585 lncRNA downstream 446118 42962095 ~ 42983687 (-) True XLOC_015018
TCONS_00029583 lncRNA downstream 505060 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00030343 lncRNA upstream 180858 43704915 ~ 43711293 (-) True XLOC_015028
TCONS_00029598 lncRNA upstream 216643 43740700 ~ 43748060 (-) False XLOC_015029
TCONS_00030344 lncRNA upstream 373883 43897940 ~ 43901052 (-) True XLOC_015031
TCONS_00030345 lncRNA upstream 1479744 45003801 ~ 45007057 (-) True XLOC_015035
TCONS_00029614 lncRNA upstream 1633445 45157502 ~ 45244708 (-) False XLOC_015036
TCONS_00029588 mRNA downstream 203681 43213527 ~ 43226124 (-) True XLOC_015021
TCONS_00029586 mRNA downstream 425449 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029584 mRNA downstream 483840 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029582 mRNA downstream 500826 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029579 mRNA downstream 778190 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029591 mRNA upstream 23408 43547465 ~ 43552252 (-) True XLOC_015025
TCONS_00029592 mRNA upstream 88122 43612179 ~ 43639331 (-) False XLOC_015026
TCONS_00029593 mRNA upstream 90228 43614285 ~ 43639331 (-) True XLOC_015026
TCONS_00029594 mRNA upstream 130181 43654238 ~ 43657468 (-) False XLOC_015027
TCONS_00029595 mRNA upstream 130771 43654828 ~ 43659779 (-) True XLOC_015027
TCONS_00029587 other downstream 398917 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029580 other downstream 751325 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029578 other downstream 834421 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029546 other downstream 1256577 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 2057827 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029605 other upstream 525590 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 534935 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029620 other upstream 2431022 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029625 other upstream 2495820 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029642 other upstream 3876132 47400189 ~ 47400307 (-) True XLOC_015054

Expression Profile

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