RNA id: TCONS_00033515


Basic Information

Item Value
RNA id TCONS_00033515
length 1825
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_015363
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19659710 ~ 19679329 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGAGGGCGCTGTTGTGCTGTCGTGAGCGCGCACATCTCGTGCTTGATTCGACTCACGGATTTCTCGACATAACAAGCATTTGACATGGTGACAGACAGCTGGATTATATTTAACACTCCTGAAGTTCAAGCGTAATAAAATTACCGACGAgcgtttaaagagatagttcactcttAAATGGAAATTTGCTGTAAATGAACTCTCCCACAGGCCGTCCAAAATGACGTCTTCTCTTCATTCAAGAAGATAGCATGGCGATCTTGCACCAGAATTGAAACAACTAAGAAGTAAATGGAGGAAGGCCTCAGGGGCAGGAGGAAGCAATGAAGACCTGGAATCCAGCTAGGACAGCAGCCCACGGTGGAGTTGATGGGATGAGGAGCCATGATTTAGATGGGAATGTCAACACCAGGGTGCTGAACAATAGCGACAGAGGGGATGGAAGTAGAGCCTAAGGGCTGGGACACGCCGTGCCAATGCCAAACAACTAGCaccaacaaaacacaattttgttTCATTGGATTGCAGCTGGGCCAAAAAACTGCACTTGAACACACCAAACTGACACAAAGAGCCGCATTATATGCCTGCGCAAGTAGGTGTGAATTTCTGCTGGGGCTAGTGATCTGTTTTATTGTTCCACATAAGAAAACCAAACTTCCGACTCACACAGAGAAAATGTAAAGAAAGCAGAATTTAGTACCATTATGACAGTAATTATTACCACAGAGGGATTCACTTAtgaaaatatgtctgataatccaTATCGTTTGCAAATATATAAGAAATGTAGTAAAATTATGGTTGGCCTCTTTGTGTTCCCTTTTGGCTTCACTTCACAACATCACACTCGCACTCTGATTTGTTGCTGAATAACCAGTTAGAGTGCTCTGTTCAGCTGACGAATCGAAGCCAATTCAATGCTAAATTGGGCCAACAAATTTCGATGTTAACCTATTTAGAGGTAACATAGGGAACACACCAAAACAGCTAGCCTAAACGATGGACCAACAAAGTAAAATGGCTGACCCCAAGACTGAGATAAAGAGCTGCAGAACCAGAGTGATGCCTATAGGATTCAAATGCCCATGGCAGAGCTGATGGCTCGAGTCACCATCACATAAGAAGGGTTCTGGTAGACCACAGTGGAGCTGGTGTGACTAAGGTAGAGCCGAAGGGAAGGAGGAGCCCAAAGAAGACAGAGGGGAAAAGTGTAGCCAGAGGAATGTTGTCTGAAGGGGAAGGTATGAGGATGATTGACCAAGGTGCAGACAGAAAGATGAGGACGATGAGGTGGGACAAAAGGGCACAGTTGAGACAAAGGACAATAGAGCCAAGGTGGAAACAATGGGTTGAAGGGCTGAGGAGATCTTTGCAGCTTAGAAACTGAAGGCAGACATCTGCCAACACAGAAGAGCTGGTACCTGGAAGACACATGGTGAGCTGAGGGACTGGCCTTAGTCTGGAGAGAATTCTGGAGAAGGTTTTTGGGCAGGGACACAAACTGTTCAGGGAGTTCAGTCACCAGAATGGTATAATCAGTTCCAGATTCAAACTGTTTTTTTGGTTTAGGAGTATCAAACAGTTAAACCAGTTTCACAGAGTCAAAAATAGTAAAACAGATTTCAAATAGGTTAATTAGTTGCAGAGAATAAAACAGTTCTTTCAGTTCAGAAGATTCAAACAGTTAGATTTATTCAGGGGTTTCAAACAGTTCAATCAATTCATTTCTCAGACCAGAGGCAGCACCTAACCACTGTGCCACAATACACAGCCTTTTGGAGAACACTCCATGTGATAGCATGCACTCaacaataaaacac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033514 lncRNA upstream 10369 19640952 ~ 19649341 (+) False XLOC_015362
TCONS_00033253 lncRNA upstream 42921 19614953 ~ 19616789 (+) True XLOC_015359
TCONS_00033513 lncRNA upstream 64516 19590044 ~ 19595194 (+) True XLOC_015358
TCONS_00030748 lncRNA upstream 97219 19559074 ~ 19562491 (+) True XLOC_015355
TCONS_00030741 lncRNA upstream 416366 19237363 ~ 19243344 (+) True XLOC_015351
TCONS_00033254 lncRNA downstream 792821 20472150 ~ 20473316 (+) False XLOC_015368
TCONS_00033516 lncRNA downstream 1046384 20725713 ~ 20776841 (+) True XLOC_015372
TCONS_00030787 lncRNA downstream 1410988 21090317 ~ 21124019 (+) False XLOC_015379
TCONS_00030792 lncRNA downstream 1495732 21175061 ~ 21177376 (+) False XLOC_015380
TCONS_00030794 lncRNA downstream 1498716 21178045 ~ 21180098 (+) True XLOC_015380
TCONS_00030753 mRNA upstream 24056 19633493 ~ 19635654 (+) True XLOC_015361
TCONS_00030751 mRNA upstream 79468 19578446 ~ 19580242 (+) True XLOC_015357
TCONS_00030750 mRNA upstream 79622 19578079 ~ 19580088 (+) False XLOC_015357
TCONS_00030747 mRNA upstream 96291 19559047 ~ 19563419 (+) False XLOC_015355
TCONS_00030746 mRNA upstream 135463 19522082 ~ 19524247 (+) True XLOC_015354
TCONS_00030755 mRNA downstream 97817 19777146 ~ 19795593 (+) False XLOC_015364
TCONS_00030757 mRNA downstream 106211 19785540 ~ 19791535 (+) False XLOC_015364
TCONS_00030759 mRNA downstream 652116 20331445 ~ 20371803 (+) False XLOC_015365
TCONS_00030760 mRNA downstream 652715 20332044 ~ 20371280 (+) True XLOC_015365
TCONS_00030761 mRNA downstream 727070 20406399 ~ 20428140 (+) False XLOC_015366
TCONS_00030754 other upstream 10369 19640952 ~ 19649341 (+) True XLOC_015362
TCONS_00030752 other upstream 30916 19628697 ~ 19628794 (+) True XLOC_015360
TCONS_00030749 other upstream 84554 19575059 ~ 19575156 (+) True XLOC_015356
TCONS_00030745 other upstream 140528 19519085 ~ 19519182 (+) True XLOC_015353
TCONS_00030744 other upstream 152517 19505290 ~ 19507193 (+) True XLOC_015352
TCONS_00030756 other downstream 105630 19784959 ~ 19793770 (+) False XLOC_015364
TCONS_00030758 other downstream 111356 19790685 ~ 19793781 (+) True XLOC_015364
TCONS_00030771 other downstream 952892 20632221 ~ 20633527 (+) True XLOC_015371
TCONS_00030772 other downstream 1046355 20725684 ~ 20776841 (+) False XLOC_015372
TCONS_00030773 other downstream 1046384 20725713 ~ 20725811 (+) False XLOC_015372

Expression Profile

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