RNA id: TCONS_00030796


Basic Information

Item Value
RNA id TCONS_00030796
length 779
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_015381
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21185903 ~ 21300115 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTAAACAAGTTCGAGTAGACGCCACCTCTTcatggaggaaaaaaataaataaataactacaaaGTTTTGggcataaatgtaaaaaagaactGGTTTACACCACCATCTACCTCGACATATATAATTGAGTTTTAATGAGTTTTGGTTTAGCACGCAGCTGAACAGCTAAGCTAATTTGCTAACTTTACGTTAAATCGAAAAACTCAAcgaaataatactaataactttACAAAAAAGTCGGaccatttacattaaaatgtcctCTTTGAAGGATTACAAGATCTTGCGTCTTTCATTAATTGTACTCTCGCAAATCGCTTACATTGTTGCTTTGATTATCAACGCGCTCGCGGGACCTGGGAAAGGCCCGTTTCAGCACAGCACTGGAAATGTATCGGACAGATATCAGACAGAGATCACTCCTGCTGGATGGACCTTCTCTATATGGGGTGTAATTTATTCCTGGCTCTTCCTCATGAACATATATTTCCTGAGCTGGCTCTGTAGAGGgtactgcacaacacacacatcaacactgCTTTTTACAGTGCTGAAAGCCATTTcttataatttgtattaattatttgCTGTCAGGTTGTACTCAAGTCCAGCAATCCTGCCCTCTGTATTCTTTGTTTCATGGATCATCAACCTGATTTTAAACTGCTCCTGGCTGGTCTTGTGGGATAGAGAGTAAGTTGTGGCCAACTTTCCTTTCACTAATATTGCTACCCTTGGTAATTATGAGGAAAGAAGTGAGtgaaaaatgtctttatt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-508 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000136498

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030794 lncRNA upstream 5827 21178045 ~ 21180098 (+) True XLOC_015380
TCONS_00030792 lncRNA upstream 8549 21175061 ~ 21177376 (+) False XLOC_015380
TCONS_00030787 lncRNA upstream 61906 21090317 ~ 21124019 (+) False XLOC_015379
TCONS_00033516 lncRNA upstream 409084 20725713 ~ 20776841 (+) True XLOC_015372
TCONS_00033254 lncRNA upstream 712609 20472150 ~ 20473316 (+) False XLOC_015368
TCONS_00030804 lncRNA downstream 169934 21356722 ~ 21368214 (+) True XLOC_015383
TCONS_00033255 lncRNA downstream 244937 21431725 ~ 21436401 (+) False XLOC_015385
TCONS_00033256 lncRNA downstream 245097 21431885 ~ 21436401 (+) False XLOC_015385
TCONS_00033257 lncRNA downstream 245101 21431889 ~ 21436401 (+) False XLOC_015385
TCONS_00033258 lncRNA downstream 245391 21432179 ~ 21434876 (+) False XLOC_015385
TCONS_00030791 mRNA upstream 3364 21174998 ~ 21182561 (+) False XLOC_015380
TCONS_00030789 mRNA upstream 29070 21090317 ~ 21156855 (+) False XLOC_015379
TCONS_00030788 mRNA upstream 42646 21090317 ~ 21143279 (+) False XLOC_015379
TCONS_00030790 mRNA upstream 42871 21128391 ~ 21143054 (+) True XLOC_015379
TCONS_00030785 mRNA upstream 109355 21063660 ~ 21076570 (+) False XLOC_015378
TCONS_00030798 mRNA downstream 43121 21229909 ~ 21300115 (+) True XLOC_015381
TCONS_00030799 mRNA downstream 122484 21309272 ~ 21321749 (+) False XLOC_015382
TCONS_00030800 mRNA downstream 126184 21312972 ~ 21320657 (+) True XLOC_015382
TCONS_00030801 mRNA downstream 169454 21356242 ~ 21371233 (+) False XLOC_015383
TCONS_00030802 mRNA downstream 169509 21356297 ~ 21371233 (+) False XLOC_015383
TCONS_00030793 other upstream 8260 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030786 other upstream 112130 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030772 other upstream 409084 20725684 ~ 20776841 (+) False XLOC_015372
TCONS_00030773 other upstream 460114 20725713 ~ 20725811 (+) False XLOC_015372
TCONS_00030771 other upstream 552398 20632221 ~ 20633527 (+) True XLOC_015371
TCONS_00030805 other downstream 188679 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030832 other downstream 1473283 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030841 other downstream 1799494 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030855 other downstream 2070989 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 2087544 23274332 ~ 23274781 (+) True XLOC_015415

Expression Profile

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