RNA id: TU418193


Basic Information

Item Value
RNA id TU418193
length 2892
lncRNA type sense_over
GC content 0.37
exon number 1
gene id slc12a2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12180768 ~ 12261242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAATTGTACACAGCACACGAAAGAAGTGAACAATTTTAATTTACTCAAAATTGATTTCCTCTGGCTTGAAAGCATCTGTTCATGTGATTCACACAACgttattatcattattgttattattcagATTCTTCTCGATGTCACGTTTTTAAGTTAGATCATTTTTGCTTTTTTCAAAGCAGCAATAATCACCCTCTAATTTTTCCTTTTCTTGTGTTGGAGAGAACCATACCGAATGCTTTGCTACTCCTTTTATAGCCTTATGGATGTGCCTTCCAGTTGGAATCAAAGGAATTAAATTATGAATCGCTCTACCCAGATTGAATGGTATGAAGAATATAGATGGATAAGTTATTTTGTTATTGAGTTTTAATGTTTTTTTGAGGAATGTTTTTATGCGAGTGGATTGTAGGAGGTTAGCAAAGAGTCTCCACTTGATGGAAAAAAAAGCTTTCTAGTGTGTATTTCTCCTCCCTAAACGGTTTCCTATTGTTTTCTGACCTCTGATTTCATTTTACTCCACATTTGTATTTGTCTTCCTTTAAGCTGTGGAAATTAAACAGTGTTCTTAGTGCAGTACCCTCTACCTACTTTATAGTAGACGCAATCAACTTCAACTCTGAAAGTTGATTTGGTTGATGCCCAAGAATGGTCTCTTAACAGAAAGATATCTGCAGGTCTACACTTGGAAGGTCCCAGGGGTCTTACTACCATGCTGTCAGAAATGACTAGAAGTGGGTTTAGCTTCGGATTAGCCTCATCATGCCAGTTGTCTCTCAAAAGCTGCTAACGCGAACAAGTGTTTCAACCAAAAGCAGCAAAACCCTCGGCTGAGTTCTTCGTCCACGTCCCCGTTGGATTTGAGTAGGTTCCCCTCATTGACGTCTGTCCTCATAGTGAAATCTATGGGCTGAATCCTAATTTGAGACGCTCCAATTTTACTCCAACTTTTTTGCTGAATTTGTGTGTTGATGTCTGAAGGAGACTTCAAAGTCTGAGTTGGTTAATTCATATCTCAAGTTAGGACTCTGCCCCTCGGGTCCCCCACATTGGAGTGACTACGAAGGAACCGGTCTAGCCCTTACAACCGAATTAAGACTTTGCCTTAACTTTGCTGAGTGTCTTTGTTCAGAGTTTGAGTTAGTTCCGTGTTCAAAAGAGGGGAAATTGTAGGTAAAAGCTATGGATTAGCATGTTTCAAGAGGGAACTGATACATGCCTCTATGCAGATGCACTGTAATCAATACTTGTTATAAAAGCCCATACCTGGTTTATTTGAAAGGTTCCACTGTCCCTCAGTTCATTTTTGGACTATTTAGGCTGGTCCTTAAACCTATTGTCGGCCCACTTTGCCATTGTTTCCGGGAGAGTAAAAATTGTAGACTTAAGGCCAACCACGTCATTGCCCCGCTCTTACCTAGTTCTCATCATTTTATGCAATtaaagttgtttttgttttttggagGGGCAGGAGGCTTGGGTCAGTTGAATGTAAATCTGATTAACACTAAAGTGGGAGTTGATGAAGGGATGGTCTCTTTCTGTTGCTTTTATTTTCAACTACTGCCATGTTGAGTTTTTGCTACAAGCTACAGGTTTTTTTAGATTTCAGTCCCACATGGAAATCCACATGCAGTGTGCTTTGCAGTTCAGGTTCATTGTACTATTACCACCCACACGACTGCATCTCCCCATGCTGTGTTCTTTATCTAGACCATGACTGCGCCATGTGATTAGGaatgactatatatatataatctctctcatatgtgtgtatatatatatatatatatacacactagtGTATAAAAATATCTCTGAAATGTGCAAAGCATGTCATTATCTTCTTTCTTTTCTGCTTCTTCTTTTTAATGGGTGGGGGATTGTACATCTTTTTAGAAGCCAGATGGTACAATCTTACTAACCAAGATCTGTTCTGTGTACTGGTGTGTAACGCACTCAACCCTCAGTTATTGTTACAAAGCGACAATGTTACAAACAAAAACACGGGTTACTCTACAttttatatttaaatatatgAATAAGAAAAGATGTATCAATCCAACCGTGCGGGGCTCTTTGTCATTGATGTCAcggaaaaatacaaaaaaaacttGTTATCGATATGTCACAACCAAATAAGGTGCGttctttatttttattgatgTGTGAGGAGTGTAATACTGTAACATCCTCTCAATGTCATTATTTAGCAGAAACTTGACACTACTGTGCTCTATCCAAGAGACCAAAACATGTCACCTGCAACTGGTATCCACGCCATGTTGAGACTTCTTCATCCTCTTTGTATTTGTAGCCAAAGcccccccctcttcttcctcacCCCCTCCATCTGTCTTGagttgttgtgagccatgacaatGGATGAAGAAAAGCATTGGTCAAAAATTCTCATGACTCAGAACCCTTAGTTCACACTGTAACTCGAAGAAAAACTAACATGTAAATAAAAGTAGTCTAACTAGGTAAATTAAGGGAGTAGAATATTAATGGCAAGTTAATATGGAGAaagatatatatttattttagttTAGAATTCTCCAAGTTTTTTTCATTTCTGTTTTAAATTCATTTGCATGTTAATTTTTGCATTttgatcaacaacaaaaaatcagtTTCTCTTTTTCAGTCTGGACATTTATCTTTTATATGCCTTTGAATGAAAAGTTGTGTTGACAAAGCAGTTTAAAGATGTTTTCTCCTGCTCTTCCATCTGGGTAGATGTGATCTACCTAGTTGGTTGAAACAGTAATGTTTGATATACTGTACTGTTAACTGTCACAGATGTTTTTTTTCTAACATTTTAACATTTAAGGTTACCAATACTTTGTACATCTATtgcaataaataaattaaatgaaTCAATCGTTA

Function

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015377 cation molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418237 lncRNA upstream 15137 12242942 ~ 12243209 (+) True G367977
TU418235 lncRNA upstream 21037 12237047 ~ 12237309 (+) True G367975
TU418229 lncRNA upstream 32273 12225851 ~ 12226073 (+) True G367969
TU418226 lncRNA upstream 36253 12221861 ~ 12222093 (+) True G367966
TU418220 lncRNA upstream 45656 12212475 ~ 12212690 (+) True G367960
TU418195 lncRNA downstream 4135 12265372 ~ 12266052 (+) True G367937
TU418252 lncRNA downstream 23002 12284239 ~ 12332912 (+) False G367987
TU418253 lncRNA downstream 23002 12284239 ~ 12343442 (+) True G367987
TU418315 lncRNA downstream 107541 12368778 ~ 12369051 (+) True G368039
TU418402 lncRNA downstream 250522 12511759 ~ 12512508 (+) True G368124
XM_021601693.2 mRNA upstream 123778 12113703 ~ 12134568 (+) True LOC110523206
XM_021601692.2 mRNA upstream 164954 12056952 ~ 12093392 (+) False prrc1
XM_036976790.1 mRNA upstream 164954 12056952 ~ 12093392 (+) False prrc1
XM_036976789.1 mRNA upstream 164954 12058144 ~ 12093392 (+) True prrc1
XM_021601691.2 mRNA upstream 206783 11947003 ~ 12051563 (+) True megf10
XM_036976808.1 mRNA downstream 55871 12317108 ~ 12321576 (+) False LOC110523213
XM_021601713.2 mRNA downstream 55888 12317125 ~ 12319211 (+) True LOC110523213
XM_021601715.2 mRNA downstream 109673 12370910 ~ 12560586 (+) False LOC110523216
XM_021601716.2 mRNA downstream 109673 12370910 ~ 12560586 (+) False LOC110523216
XM_021601717.2 mRNA downstream 265669 12526906 ~ 12560586 (+) True LOC110523216
TU417909 other upstream 378311 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 829636 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 1281194 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 2409192 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 3029115 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 847459 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 1504010 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1994566 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2059867 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 2106435 14367672 ~ 14368161 (+) True G370414

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU242412 True 3809 lncRNA 0.37 3 NC_035916.1 24814604 ~ 24819326 (-)