RNA id: XM_036976977.1


Basic Information

Item Value
RNA id XM_036976977.1
length 6287
RNA type mRNA
GC content 0.44
exon number 28
gene id LOC110523357
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17791860 ~ 17871592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAGGAGGTGGAGTCTGAGGTGGGGAGGGAGAAGAAAGAGTGAGGGAAAAGGAGAAAAAAAGGAGAAAAAGCACACAACAGAAAAGGGGAGGACATCGGTGCAATTGCGTGAATATTGGTTGAATTACATTGAAGAAAATAGTTGCAGAGAGGAAGAAACCAAGATGATAACGCCCTACTTCCTACAGAATTTCTGGGGTGAAAAAAACAATGGATTTGATGTTCTCTACCACAACATGAAGCATGGTCAAATCTCCTCCAAGGAACTTACGGAGTTCATCAGAGAAAGGGCTACCATAGAAGAGGTCTATGCCAGGTCAATGACCAAACTTGCCAAGTCAGCTGGCAACTTCTCTCAGCTcggGACGTTTGCCCCGGTGTGGGATGTGTTTAAGACGTCCACAGAGAAGCTGGCCAGCTGCCACCTGGAGCTGGTGAGGAAGCTACAGGAGCTTATCAAAGACGTGCAGAAGTACGTGGATGACCAGGCCAAGGCCCACAAAAAGACCAAGGAGGAGGTGGCGTCCACACTGGAATCAGTCCAGACCATACAGACCACCGGAGTAGCCTTACAGAAGTCCAAGGAGAATTACAACGCCAAAACTGTGGAGCAGGAGAGACTCCGCAAGGAGGGAGCAACACAGAGAGATGTGGACAAGGCTGGAGTGAAGGCCAAGAAAGCCACGGAAACCTACAAGGGCTTTGTGGAAAAATATGCCACAGCCAAGTCCGAGTTTGAACAGAAGATGGCTGAAACTGCACagAAGTTTCAGGACATCGAGGAGAGCCACATCGTCCACATGAAGGATATAATTCAGTCATACACACAGTCTGTTGACGAGACGCACGTTCAGATCGGAGAGGTCCGTATAGAGTTTGAGAGGAACATGGAGAACACCTCTGTTGAGGGCTTGATACAGAAACTGTCTGACAGTAAAGGAACGGGCAAAGAGAGACCAGGTCCTATTGAGTTTGAAGAATGCAACACTGCCATCGCCACTGAAgGAGCCAAACCCAGAAAGAGGAAAACATTTGCCATCCGCCGGAAAGACAACAAGGACACAGACTCGACGGAGTCGACAGAAGTTGAACCTGCTAACAATACCAATGGAGTTCCTCCTGGATACTATGGCACCATAGACTTCCAAAACGCTAATGTCCCCACGGTTGATGAAGATGGCTTCTGCATCAGACCGGAAGACCGCAACCAAAATGATGCCAAAGAGAACTCGTTCTATTCGTCGAGTGACTCGGAGGACGAGGATGAACCCAGGAAGTTCCGTGTGGAAATCAAGCCGGTGGCGCCCAACAACAGGACGCAACAAAGCCGAGCCACCATCGACCAACTCAAGGCCTCCATTGGAAACATCAGCCTATCGCCACCAACCTCGGGTCAGATGCGAAGGAACCAATCCAGGCTGTCAGGAATGCATTCCCACTCAGCGATAGGCTCTCAGGTGCTAGGTGATGAGTTGGGAAAGGCCAGGATGTCAACATATTTCAATGAcagTAGACCTGCTCTCAATAATGACCTTCTCTCACTGGATCCGTTCTGTCCCGCCCCCACCCTAAGaggctcctcctcctcagtgtccTCATCAACAGtGCCTGCCCTGGCCAGACCCACTACCCCTCAAACTGGGGCCATGGTGGCTCCTCCACGACCCTCTTCCAGACCCAAACTACCCACAGGAAAACTCACAGGAATCAATGAAATTGTGCAGCCGTTCAGCCCGACCAAGATGTTGTCCAACGCCAGTCCTCCTCCGGCTGCTCCCCTGGCCCGGGCAGAGagctcctcctccctgtcctctaccGCCTCTCTCAGTGCCTCCAACACACCCACAGTGGggCCTGAGCGTATcttccgtccctccctctcctctccggaACCAGAGttcctcctttctccctgtcctctgtttctcctcagcCAAAAGGATGATGGTTTCATCGGGAAGCTGCCCACCTTTGAGAAGTGCTGTGAAACGCCTGCAGGGACGTCTCGCGGTCCCAGCCCAGTGACCCTGGCGTCCCAGGATGCCTTGCCCATTGCTGTGGCCTTCACAGAGTCTGTTAATGCCTACTTCAAAGGAGCTGATCCCGCTAAGTGCATAGTGAAGATCACAGGTGACATGACCCTGTCCTTCCCCATGGGTATCATCAAGGTGTTCACCAGTAACCCCTCCCCTGCTATGCTCACCTTCAAACTGAAGAACACCTCCAAGCTGGAGCAGATCCTCCCCAACCAGACACTACTGTTCAGTGATCCCTCGCAAAGTGATGCTCATACCAAGGACTTTTGGTTCAACATGCAAGCTCTCACATCGTACCTCAAGAAAGCCTCAGAGCAGAACCCTGCTGCATCCTACTACAACGTTGACATCCTCAAATACCAGGTGTCCTCTAAAGGAATCGCATCGACCCCTCTGAACCTGGCAGTGTACTGGAAGTGTGACCCCGCCACCACTGACCTGAGGCTGGACTACCACTACAACCCAGAGTCCATGCTCTGTCCCGGCACTCTCTCCAACGTACAGGTCCTAGTGCATGTAGATGGAGGGGTCACCAACATGCAGTCCCTGCCTAATGCTATCTGGAACTCAGAGCTGAACAAGTTTCTCTGGAAGCTGAACGATATCTCTGAGAAGTCTGATAATGAGGGCTCGGGGTCTCTGAGGGCTAAGTTTGAGCTCTCCGACGGCCCGTCCACCCCAACCACCCTGGCTGTGCAGTTTATGAGTGAGGGGAGCACGCTGTCTGGGGTGGACATAGAGCTGTTGGGAACCGGGTACAGACTGTCCCTCAACAAGAAGAGGTTTGCCACAGGTCGTTACATGGCAGACTGTTGAGGGCATACCGTCCTGGACCCCCAAGCACAACGACTTTATAGAACATTTATTTTCAATATTTGAGTCCTTTTTGTCTTATTTATTAAAGGGGAGGTGGAGACTGGAGAGGTGCAGCAAACACACCAGGTTTTATGTGACGCATCCAAACACTTTGCATTATGTCCCAATGTACCCTGTCTGTCTCGAGCAGAGATCTCCTCAGTACAGTAAAGCAGCGCTGAGTATTGAACACTGTTTGAAAAGAAGAAGAATacatgaaataaaaaattaagttGAGCTGTCAGGAAATGGAAATGTATAGATGTTGAGAAGTGTAATGCTTTCTGATCAATTCAGACTTTTATAAAGTCAGGACCGTAGTGTTTCGTTATGTAACAATGTATGgattatatataaatacatattatatacaaaaaaaaatgtacaaatgaAAACAATCTGCACTAACAatctaaaaatatatttgttcTCTCCTTTGTAAATTGTGTATGTATTCCACTGAAGCTCTTGTAGTAACAAAGATTCTGGGTAAAACAGTGAGaaaagagaagaaagaggagaggaaatgccACACTATCCTCCCTCATCccgctctccttctcttctcaaTTGCAAGTACGATCACTGAGTATTTTACTTTGTGAGACTCAAGTCGTGTTTTTTTCTGATTTACCTTTATTTCCTGGGTTATTTTTATTCTGATCATGTGCAATGAAGAAATGAAGGTAtaagctgtgttttttttttttttttttactaaacagATTCTCTAAAATGTTATCATGGCACAACATTAATCGGTTGTCCTGTCGCTTCTGACAACTGGTAATAACAAAAGGTCAGCTCTCTTTCAAAAGCAAAAAAACTCAACTTAACTGACCTCAGTGCCTCTTTCTTTCTGTGGATAAATTGATTGAAAACGTAGCTACTTTTCTCTAAGCCCTTTTGTATGTTCAAAAGGCACCGCTAACAAAAAGAAAAAACACCAACCTTGTGCAAGTTGTTGTTTTATAATCTTGTTTTTGGATGTTGAAGGGAAAATGCGTCCAGTTTCTACACCAGTCAATCCAAAAGGCATCTGTCTTCCAGAAACTGCTGATCCAGTGGACTCACTGTCTCAGTTCTGTGTCTTTGCTATGATGTTGTCTTTTCTACTGGGGTATTTTTTCTATATTTGATCCGATAGTGATTTTTGTTCCCAAACCGCCTTCGGTCTATTTGAGAGCACTGGACAGCCTACTAGCCGAGCATCTTTATCACAATCTAGCCAAATCAATTCTAGAAATGCCTTAAGAATATATACCTTGTCATCTTTTGATAATGGTAATAAGATGCTATCCAGTTGTGATAGGCTACATTTCTGCCGTGTTTGcctgtgaggagagagacagacaacagtTTTTGGTGCTGACTCGATTTCATACAGAGAGGTTCATTCTTGCCTTGTATACCAATGGAGGACCAGTATCTAGAAGGGCTACATATCCTAGATGGAGAGATGCCTACACCTTATGTAGCAGTTCTATCAATATCACTAACGTGTGTTTTTGACAACCTTTTCCAATGCCTTCTCCCCAAAACCACAGTTTTGATAGTATAGATAATGATCACTGTACTGTATTTTCATTACAAACATTGATATGGGCACACCAGTAACACTGTGATTGTGGACTGTTAGTGTTCCATCATGTATGTGGCCATCTGAACACTGTATGCTTGTAAACTGCTggcccatatccacaaagcgTCTCCGAGTaatagtgctgatctaggatctggcCATATAATACGATCAATTATGAACTAAAAGACAACTGATCCTATATCGGCACTCTTACactgagacgctttgtggataACAGACCCTGGTATTTGGTACAGTTGATACTGTTAACGTTCTCGCTgcttctgaaatggcaccctatgccctacaaTATATAGCGCAATACTTTTGatcagtagtagtgcactatggaataGGATGCCTTTAAAGAGGCACTATTTGTAGATATGGTTAATCGCATCGCTTACTAGTAAACGTGATCTGACCAAACCTCAATATATAACTTTTCAGCACAACAAAACACCTAGTCCATGTGGCCAGTCTTCTAGAACTATGAGAGAACACCTAGTTCATGTGACCAGTCTTCTAGAACTATGAGAAAGTACCTAGTCCATGTGGCCAGTCTTCTAGAACTATGAGAAAGCACCTAGACCATGTGGCCAGTCTTCTAGAACTATGAGAAAGCACCTAGTCCATGTGGCCAGTCTTCTAGAACTATGAGAGAACACCTAGACCATGTGGCCAGTCTTCTAGAACTATGAGAAAGCACCTAGTCCATGTGGCCAGTCTTCTAGAACTATGAGAGAACACCTAGACCATGTGGCCAGTCTTCTAGAACTATGAGAAAGCACCTAGACCATGTGGCCAGTCTTCTAGAACTATGAGAAAGCACCTAGACCATGTGGCCAGTCTTCTAGAACTATGAGAGAACACCTAGACCATGTGGCCAGTCTTCTAGAACTATGAGAAAGCACCTAGTCCATGTGGCCAGTCTTCTACGACTATGAGAAAGCACCTAGTCCATGTGGCCAGTCTTCTACGACTATGAGAAATGTGATTATTGTTTAACAATGTTGATCGAGATGTATTTGTGAAGTCAATGTCTAAAATAGGATTTATTTTGTATACAGTACAATAAGTCAGAATTGTGTTTTGTAAGGCATGGATTAATCATCACGGTTTGAATTATTGGTCCTGTTTTATTTGTATGTATAAGGTTTTTAAGGATGATATTTGTTGAAGATACAGTTTAAGACTCCACCTTCAGTAGAATTGTAGAGGCAAATACTAACTTTATTTGAATGAGGGGTAAAAttatacacaaataatattttccaGAACACTTTTTATATGGCCCAACCAAATAATGTGTGACTATCCGAATGGAGTTGGAGTTTACTAAACTAAAGCGTTATCATGGAAATCCAACGTAGCATGTAAGGAACGTTTTAAAGAGAGGAACAGCGTAtcaaaatcagattttttttaatttttatggAGTTCTCCTTAAAATATCATATCAACAGCGCCGGCTACTCTCGATCCACCCACTAAGATCAGAGAAACCCCCACGCAGAAACTGAATATATATGCAAAGTATATTTAGCGAGCTGGTTCTTGCTGTCTCTGCATAGCATCCAgtgattcttttttttttctttcttggaGCTTGTCATTatgatttttgtttgtttatatgTCTATGTCAAAAGGAGAGTTTAGTTTAATTTCTCATCAAatgtacatttttacaaatatCTCAGCCACTTTGTTTTTTCTGTTCACTTTATGATCCATCTCAATGTGCCTGTATTAAATGTATAATATATGATTATATACCTATATATAAAAATGACTACTTAAAATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424980 lncRNA upstream 2021 17789516 ~ 17789847 (+) True G373797
TU424979 lncRNA upstream 2440 17789132 ~ 17789428 (+) True G373796
TU424975 lncRNA upstream 5117 17786537 ~ 17786751 (+) True G373792
TU424970 lncRNA upstream 11727 17779569 ~ 17780141 (+) True G373790
TU424962 lncRNA upstream 11981 17779569 ~ 17779887 (+) False G373790
TU425029 lncRNA downstream 11758 17883350 ~ 17887537 (+) True G373833
TU425044 lncRNA downstream 40888 17912480 ~ 17954790 (+) False G373848
TU425045 lncRNA downstream 76581 17948173 ~ 17954790 (+) True G373848
TU425313 lncRNA downstream 131232 18002824 ~ 18003153 (+) True G374094
TU425314 lncRNA downstream 138520 18010112 ~ 18010381 (+) True G374095
XM_036976968.1 mRNA upstream 13158 17727836 ~ 17778710 (+) False tnpo1
XR_005051669.1 mRNA upstream 16261 17727521 ~ 17775607 (+) False tnpo1
XM_036976967.1 mRNA upstream 548957 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 548957 17235815 ~ 17242911 (+) True LOC110523353
XM_036976965.1 mRNA upstream 574682 17191416 ~ 17217186 (+) True LOC110523352
XM_021601985.2 mRNA downstream 6025 17877617 ~ 17879225 (+) True LOC110523359
XM_036976541.1 mRNA downstream 28901 17900493 ~ 17930164 (+) True tmem174
XM_021601989.2 mRNA downstream 169111 18040703 ~ 18047631 (+) False btf3
XM_021601990.2 mRNA downstream 169135 18040727 ~ 18047631 (+) True btf3
XM_036976985.1 mRNA downstream 195758 18067350 ~ 18177035 (+) False arhgef28a
TU424889 other upstream 84111 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 909683 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 909683 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1053368 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1570935 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 195851 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2111669 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2719888 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2871992 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2959666 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile