RNA id: TCONS_00031108


Basic Information

Item Value
RNA id TCONS_00031108
length 1761
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_015565
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31942390 ~ 32009716 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATATATTTTGTAATTGGTGTTTGTGAGGTCAGTAAACCGTAAAGCCAGGTAGGATAGTAGACTTTATCAGTTTTGTCTAAGAAGGCATTTAGTAAACCATTACGGTAATATTTATTAATCGTCACCTTGGTTATTTGAAACGGCTAGACCTGTAACTGCCCGTCATGCAGAGATGCAGCTCGGACCTGCCGATATGATTCAGGTATGAAGGATGTGCAAAAAGTCCAAGTCAAAACCATGAAAAAGCAAAGTCTGGTACAATGAAAAAATCAAAGTCTGGTTGTGATTCTGGCCTACAGCAGAGTCACAACAAAAAACCTAAAAAGAATCATGGATCAACACCAGGTACTCCAGGTCAGAAAGCAGAAGAAAAGAGCCGGGCAGTTATTAAGGATGCCTGTTTTTCTGGACCTGAGAGAAGCACTAATTCTTCCTGCACTATGCAAAAACAACATGCTGATAAAAAGCCCAGATCTTCATCCCAAGAACATTTGATGAAGACATCTTCTGCTGAAGATGAGAAAAGtgATTTGGACCTTTACAGAGGAGAAGAGGAGATAGCAGAAGAGCTGAAGAAGCAGCACCAGCCAGACTCGGAGGCTGTTGTTGAAGCTCAGAGCAGCGTGTCAGCAGCTGAGGATCTTCAGACATACAGCGAGAAAGAGTGGAGAGGCAACACTACTAAAAGTCAACTCATACGAAAAggATATGAAGCAATAGCCAGTGAGTTCCGTCTATGCAGAGTAAGAGGTGATAATTATTGTGCTCTAAGGGCGACGCTTTTCCAGGTGCTGAGTCAGTCCAAAAAGCTTCCTGCCTGGTTACAGGACTCTGACATTGTTAAGtggCCAAAAGAATTGCATTCTGATGAGAATTTCTTAAAAGAGTGGCAGTTTCCACTTGAAAGCAAGAAGAACAATGTGCAGCATCTTGAACAGTGTCTGGACCTACTGAAGAAAAAgtggCAAGAGGCAGTCCAGTGTAAAAGTCTTGCAGAGAGGGAGCGCATGAGCCAGCAGGTGTTCAGAGGTCTTAATGAGGAGTATGAACTTCTGGAAGCTTTAAAGTTCTTGATGCTCAGGACTGCTGCTCAATTACACTTAAATATGGAGAAAGGCTCTGATGTTCCAGAGTTCTGCTGGCTCCTCTTCGCTCGGGACTCATCTAAATGTCCTAAAACCTTCCTCACCAACCACCTGAGACATGTAGGCTTCAGCGGTGGCCTGGAACAGGTGGAGATGTGTCTCCTGGGTCATTCCCTACAACAGACTATCAAGGTTTTTCGGCTGTACAAGTGTGACACTGAAGAATTCATCACATACTACCCAAATGACCACAAGAACGACTGGCCCCATCTAGTTTTACTCACAGAAGACGACCGACACTACAATGCACTCATACCTAAAAAGTCATCCAGATTTGATGAATATGGTAGGCCAAAGTGGAATCCGCCCTCAGACGGACAATCAAACTTAACGACACCTCTTTAAAGAATATATGGCAATCACACACAATCTACAGAGCTCAGGAGTCTGAATGGGatgtttttgcttattttattttaatttaaagtaaaacaaatgatGTCTTTATTCTGTTATCTGCTTAATTGCGTTTGTAATCTATTATGTGCAATGGTTTTATGGAACATCATTTTACATCCAGCTGGAATAGATTTTTTTTGAATATAATTCCATTTCCGTTTATATGGTTAATTATTGCTTtgcatattataataaaaatgaaagtgtAAATCTA

Function

GO:

id name namespace
GO:1990108 protein linear deubiquitination biological_process
GO:0071797 LUBAC complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-627 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein linear deubiquitination. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in otulipenia. Orthologous to several human genes including OTULIN (OTU deubiquitinase with linear linkage specificity).

Ensembl:

ensembl_id ENSDART00000146758

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033558 lncRNA upstream 73671 31866499 ~ 31868755 (+) True XLOC_015564
TCONS_00031101 lncRNA upstream 156144 31784012 ~ 31786282 (+) True XLOC_015559
TCONS_00033557 lncRNA upstream 401836 31537338 ~ 31540590 (+) True XLOC_015554
TCONS_00031093 lncRNA upstream 430812 31503305 ~ 31511614 (+) True XLOC_015553
TCONS_00031088 lncRNA upstream 493012 31448456 ~ 31449414 (+) True XLOC_015551
TCONS_00033559 lncRNA downstream 67641 32019642 ~ 32090145 (+) False XLOC_015567
TCONS_00031116 lncRNA downstream 67660 32019661 ~ 32090145 (+) False XLOC_015567
TCONS_00033563 lncRNA downstream 67661 32019662 ~ 32090145 (+) False XLOC_015567
TCONS_00033565 lncRNA downstream 67661 32019662 ~ 32090145 (+) False XLOC_015567
TCONS_00033567 lncRNA downstream 67661 32019662 ~ 32090145 (+) False XLOC_015567
TCONS_00031105 mRNA upstream 89081 31838442 ~ 31853345 (+) True XLOC_015563
TCONS_00031104 mRNA upstream 105524 31833997 ~ 31836902 (+) True XLOC_015562
TCONS_00031103 mRNA upstream 114466 31806602 ~ 31827960 (+) True XLOC_015561
TCONS_00031102 mRNA upstream 136822 31804582 ~ 31805604 (+) True XLOC_015560
TCONS_00031100 mRNA upstream 268023 31671545 ~ 31674403 (+) True XLOC_015558
TCONS_00031113 mRNA downstream 5553 31957554 ~ 32006312 (+) True XLOC_015565
TCONS_00031114 mRNA downstream 64255 32016256 ~ 32018371 (+) False XLOC_015566
TCONS_00031115 mRNA downstream 64515 32016516 ~ 32017594 (+) True XLOC_015566
TCONS_00031121 mRNA downstream 791806 32743807 ~ 32756706 (+) True XLOC_015575
TCONS_00031123 mRNA downstream 828137 32780138 ~ 32790887 (+) False XLOC_015577
TCONS_00031085 other upstream 597230 31330923 ~ 31345196 (+) True XLOC_015548
TCONS_00031082 other upstream 611468 31271082 ~ 31330958 (+) False XLOC_015548
TCONS_00031079 other upstream 834012 31107929 ~ 31108414 (+) True XLOC_015547
TCONS_00031078 other upstream 840853 31101088 ~ 31101573 (+) True XLOC_015546
TCONS_00031072 other upstream 1016122 30916200 ~ 30926304 (+) False XLOC_015542
TCONS_00031118 other downstream 652846 32604847 ~ 32608027 (+) False XLOC_015571
TCONS_00031119 other downstream 749819 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031120 other downstream 749850 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031122 other downstream 806662 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031124 other downstream 838362 32790363 ~ 32790886 (+) True XLOC_015577

Expression Profile

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