RNA id: TCONS_00031078


Basic Information

Item Value
RNA id TCONS_00031078
length 281
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_015546
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31101088 ~ 31101573 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGCCTAGCACGAGGGAGAGAGCGATCGCTTGTACAGAGAAATGCACGGAGCTAAAGTTACATTTAAGGACTGATTTAAGAGAGATTTAATGCatatttgagtttgttttttgttccgTTCATCTTCATTGTTTGAACACCTGGTTGGAAGGGAGAACAAGCTCTTACGGTGTTGTACAGTCTTTAAGGACGGCAAATGCAACAATAAAGGCACAAAGGAGGACAGTGCAACATCAGTGCATGAGTTTAATCCTTTTATTTTTCCAACCGGGCTGTTACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145926

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033270 lncRNA upstream 17008 31075576 ~ 31084080 (+) True XLOC_015544
TCONS_00031074 lncRNA upstream 142240 30955780 ~ 30958848 (+) True XLOC_015542
TCONS_00031065 lncRNA upstream 278876 30808329 ~ 30822212 (+) True XLOC_015538
TCONS_00031057 lncRNA upstream 376932 30721071 ~ 30724156 (+) False XLOC_015536
TCONS_00033554 lncRNA upstream 766575 30329405 ~ 30334513 (+) True XLOC_015527
TCONS_00031080 lncRNA downstream 10903 31112476 ~ 31115894 (+) False XLOC_015545
TCONS_00031081 lncRNA downstream 10903 31112476 ~ 31132662 (+) True XLOC_015545
TCONS_00033555 lncRNA downstream 169509 31271082 ~ 31345196 (+) False XLOC_015548
TCONS_00033556 lncRNA downstream 190073 31291646 ~ 31292603 (+) True XLOC_015549
TCONS_00031088 lncRNA downstream 346883 31448456 ~ 31449414 (+) True XLOC_015551
TCONS_00031075 mRNA upstream 116580 30960351 ~ 30984508 (+) False XLOC_015543
TCONS_00031076 mRNA upstream 118562 30969029 ~ 30982526 (+) True XLOC_015543
TCONS_00031071 mRNA upstream 141175 30916188 ~ 30959913 (+) False XLOC_015542
TCONS_00031073 mRNA upstream 148010 30948503 ~ 30953078 (+) False XLOC_015542
TCONS_00031069 mRNA upstream 192788 30904069 ~ 30908300 (+) True XLOC_015541
TCONS_00031083 mRNA downstream 207014 31308587 ~ 31363407 (+) False XLOC_015548
TCONS_00031084 mRNA downstream 228785 31330358 ~ 31364659 (+) False XLOC_015548
TCONS_00031086 mRNA downstream 281017 31382590 ~ 31435158 (+) True XLOC_015550
TCONS_00031087 mRNA downstream 335974 31437547 ~ 31452606 (+) False XLOC_015551
TCONS_00031089 mRNA downstream 352989 31454562 ~ 31457860 (+) True XLOC_015552
TCONS_00031072 other upstream 174784 30916200 ~ 30926304 (+) False XLOC_015542
TCONS_00031070 other upstream 179612 30916188 ~ 30921476 (+) False XLOC_015542
TCONS_00031062 other upstream 268113 30786783 ~ 30832975 (+) False XLOC_015538
TCONS_00031039 other upstream 824026 30276217 ~ 30277062 (+) True XLOC_015524
TCONS_00031038 other upstream 830925 30269306 ~ 30270163 (+) True XLOC_015523
TCONS_00031079 other downstream 6356 31107929 ~ 31108414 (+) True XLOC_015547
TCONS_00031082 other downstream 169509 31271082 ~ 31330958 (+) False XLOC_015548
TCONS_00031085 other downstream 229350 31330923 ~ 31345196 (+) True XLOC_015548
TCONS_00031110 other downstream 840886 31942459 ~ 31948455 (+) False XLOC_015565
TCONS_00031118 other downstream 1503274 32604847 ~ 32608027 (+) False XLOC_015571

Expression Profile

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