RNA id: TCONS_00031075


Basic Information

Item Value
RNA id TCONS_00031075
length 4923
RNA type mRNA
GC content 0.45
exon number 20
gene id XLOC_015543
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30960351 ~ 30984508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCTGCCTGACCGGTTCGCGGTGGTTGTACCGTAGAAGTGACCCTCCGAAAAAAAATACTCAGTGTTATGATACACCAAAACATCAGGAGGGATCCGGCAGACATGGAGAGCTGTAAATACTCGCTGCTtgttgaaatgaatgaataacgtcGGCGCGGACAAGCAGACGGCGACAAAACGTCCAGTATCTCAACAACAGCAGCAACTGAAAGTCGGACACCATGAATTACGTGGGGCAGTTGGCTGGTCAGGTGCTGGTGACCATGAAGGAGCTGTATAAGGGTATTAACCAGGCCACACTCTCCGGCTGCATTGATGTAGTAGTGGTCCGCCAGAAAGATGGAACCTACCAGTGCTCTCCTTTCCATGTGCGCTTTGGCAAACTGGGTGTGCTGCGTTCCAAAGAAAAAGTGATTGACATAGAGATCAACGGGGAGCCTGTGGATCTCCACATGAAGCTGGGAGATAATGGAGAAGCTTTCTTTGTACAGGAAACCGAGGAGCAGAATGAGATTGTACCAGCACACCTGGCCACCTCCCCCATTCCCACAGAGAGTCACTTATTTTGGATCGGAGGCGATCATAGGTCAAGTCAAAACCTGGACGATGACCCACTTGATCCAGAGGACCCTCCTGATCGACCAGTTGCCAGCACAGGGGGagccaagaagaagaagaaacggaGAAAGAAGCATAAAGGTGATCCCCGGCGAGAGGAGTTCACCCCCCCTGCCGTTATCAGCTCTACCCCTTCCACAGATGAAATATTTGAGATGGACCTGAGTTCTGATGAAGACGCTATTTCCAACACTAGATCATCTTCAGTCAGTACAGTTAAAGAAAGTGAACCCAAATTACCAACAATTCGACATTCTTTGGACAGCTACCCTTACTCTGACGGAGACTGGTCTCCATCAGATAGCAGTCATGCTATGTCAGAGGCCTTTTCTCCCAAGAGTGACTCTGAACTGGTTGTTCGGCCCTCAGAGAGCCTTCTCAAAATGGAGTCACACATGCAATGGACATGGGGAGAGTTTCCAGAATCTACAAGGgtttctaaaaaagaaaagataGAGCTGCCGAAGACCGTGACCATAACGCCTTCAGAAAACACTCACTTCAGGGTCATCCTCAGCTCAGAGGCCATGGAGACGGATGAAAGAGAACCTACATCAGGCACTCCAAGTTGCACCATAGTCAAGCCTGAACCCCGCACTCCTGTGACCCCTAAAACTCCCACTGAGTCTGAGTTGGAGACGATGCCTTGTGAAGTGCTGACCTCCACTCCTTCAGACATTCTCACTGCTGCTCCCACTTCTCCAGCCGctgtctctgctgctcctttgGGTGGGGACATTGGAGATGTTGGTTCCAAAACTGACTCTCCTTCCAAGAAGAAAGGTGTCCCAAAAAGGAGTCAGCACCAGGGCCCAGAGGACATCTACCTGGACGACCTGAATGTGCTGGAGCCTGATGTTGCTGCTCGCTATTTTCCTAAGagTGATTCAGATGCTGGTTCCAAGCACTGGATGGATTCTGGGATGCACTCTGGCTCTCAGTCACCACAGTCTGTGGGCAGTGCTGCGGCTGACAGTGGCACCGAGTGCCTGTCTGACTCTGCCAGTGATCTCCCTGACGTCACCCTGTCTCTGTGTGGAGGACTCAGCGAGAATGGAGAGATTTCCAAAGAAAAATTTATGGAGCATATCATCACATATAATGAATTTGCAGAAAATCCAGCCATCATAGACAATCAAAATTTAGTTGTTAAAATAGGAAACAGGTATTATAATTGGACACTGGCCGCCCCTTTAATCTTAAGCTTGCAAGCATTTCAGAAGAATTTACCCAAGGCAACTGAGGAAGCTTGGGTGAAAGAGAGGATGCCAAAGAAATCAGGGCGCTGGTGGTTCTGGAGAAAGAGAGCAGACAGCACTATTAAACAGTCAGAAAGCACTGGAAAGCTGGAAGCAAAGCAGTCCCAACTGGAGGAAGGGAGCTCTTCTTTGTCCATGGAAAGTCATGCCCGCAAAGTGGACACCAGGGACTCATCCAGTGATGAGGAAGGGAAGGAGGTGAGCGCTGCTGCATCATCAATGGAGCGCAAGATCCAGTCTGAGCCCCACGGccacacatccacacactcttaCCGAAAATCCCTCCGCCTCTCCTCCAGCCAGATTGCTAGTTTGAAGCTGAAGGAAGGACCCAATGATGTGATGTTCAGCATCACAACACAATACCAGGGCACATGCCGCTGTGAAGGCACCATCTACCTGTGGAACTGGGATGACAAAGTCATCATCTCTGACATCGATGGAACCATCACCAAATCAGATGTGTTCGGCCAGATTTTGCCGCAGTTTGGAAAGGACTGGACCCATCAAGGCATTGCTAAACTGTACCACTCGGTGGCTGAGAATGGATATAAGTTTCTGTATTGCTCAGCAAGGGCAATTGGCATGGCAGATATGACACGAGGGTATCTGCAGTGGGTAAATGACGGAGGTATAATCCTGCCACGTGGACCACTCATGCTCTCTCCCAGCAGCCTTTTCTCAGCATTTCACAGGGAGGTGATTGAAAAGAAGCCAGAAATCTTCAAAATCGAATGCCTTACTGATATCAagaaccttttcctgcccaacaAACATCCTTTTTATGCCGCATTTGGGAACCGAACAAATGACGTCTTTGCCTATAAGGAGGTTGGAGTGCCAGTTTGCAGAATCTTTACGGTTAACCCCAAAGGAGAGCTCATACAGGAGCAAACCAAGGGCAACAAGTCCTCGTACAGCAGATTGAGTGAGCTGGTGGATCATGTCTTTCCTTTGCTGAGTAAAGAGCAAAGTTCTGCTTTCAGTTTCCCGGAATTCAGTACCTTCTGTTTCTGGCGTCAGCCAATCCCGGAGATCCGTCCAGAGGACCTACTTTTATAGACCATCCTGAAGGCCCATCTATTACCTGCTCGCGTCATCTCTGCCTTCAGAAGCACTTAGCCGGTACTTTTCAGCATCTCACATCTATAGTTTTTATTCCCCCACACCACCTGAGAAACATGAACTGCACAAAAACACCTGTAAGAACCAGCGTGAGAGAAAACTCCAAAACACAACCCGGTGTCACATTAATGGGATGCACGCAGAACTTCCACAAATTAAACACCTGGTGCTGCTCTTAAACAAGATTTCTAATCTGTATCATTTTGATTAGCTGCTATGATTTAGGCTGCTTCAGCTCTTGAAGGAATTTCTTGCTAATGGGCTAATGTTTACAGTATTAGTTAGACAGCCAGTGGCCTCTTGGCCAACGGAACGAGTACACAGCTgtttgtctgagtgtgtgtgtgaggttaaACGTGGCATAAAGATACGTTTATAATGGAAAGTAATTAACGATATTCTTTACAACCACTAATTTACAACTGTAGATCATAGCTTATTTATATACAAAGGTATTAGTTAGAATTAACTAATTAACATGCACTGCCTCTAAGATGTGGTGACTGTATGACAGTTTGAATATGCATTGCCAGATGGTGCGAAATGAGCTCTGAATCTCGGAGATACTGGAAAGTATGCACAGAATGAGCCGTGCCACGCGAGGACACGCAGCTCATCATTTACAGTTCAACAGATTTAGCTCATACAGTCGACTAGATTCACATGAAAAGTACACAGAGGAGTTCATTGTAATTGGGCTTTTCTTTATTTCCAACTGTTGACATTTTCATCGTCTGGTTGCTGCAGAACGCCTTAGCGATCGCACTTTTTCAGCTGGAGCCTAGAGAAGAGAAATATCAGATAGTCTTGCACTCAACTCGTGACGGAAATGCAATAACGTTCAAAGCTTTTCTGCAGGCTTATGTGCACAGTGCAAGGATTTAAGTGCTTTTAGATCCTTCATGTAAACCTCAGCAAGAGGTCTGTATTAACTTAATAATATATTTGCTTTCTAAATGAAGGTATGTTGTATGTTGAGCTGGCCTGAGGCCTGTGGGAGAGTAGCAGTAACAAATGCTcttgaacatttttgtttgtttgtttttccactTACCAGGCCTTTGCATGCTTCGTTTGGAATATAAAGATGACCGTTTATGTTTTGACGCTTTCTTTTTCGGGTAGACATTCCGAAGGGTCGTCACGTTGTACATTTTCAATATTAGTGGATGATCTTGAGCAGTAGAAActaattatttgaaaacattgaAGCTGATGtgcaagtgaatgatgagagtgATCTGATCTTTCCACTTGGTCACGGTTGACTGAAGTAACATGCCCTTTTTTCCGTCTAGTTTGTCATTAAGGTCTCGGCTTGTACCTTTAGGCTTTGGTAGCGTTAGGATAAGTTTTAGGGCACTGTGTGCTGGATGTTTAAATAGATGTACAGAATTAGAGcacaacaaattatttctttaaggcaaatcattagggAATATCGGGGCATTTCATGGTTCAGTTGTGATTGTGATTTTGTATATGTGTGTTGCGCTTCTTGTCTGCAGTTATGATGTTTGGAAGTGAAATCTGTTAATTGTTAACAAAGGAATCCCATTCTTTCTATGAAAGTAATACCTCTTGTGTGGGATGAACACACTCATCTTGTATGAAACTAACAATTGTAAAAagacacagaaaaaaaatgttatgaaaaaaaGCCTCTTCTTTCTTTTGTTGTAAGTGCTGAATGTGTTTTGTCATTCTTCTTGATCTTCGATGCcttttgttttacttgcttttaTTTCTAGTTGTGTGTACTTGAGTGAGATGGTGCGTGTTTTGGGTTCGCTCTATAGGTTTGCATTGAGTTTGACCAGCTTATATACAGTACCTTGAAATGGATAATTGtattataaatttacaaaaactaTGGTTTGGATGATGTTTATGAATCTATTAAAGATGTATTTAATACA

Function

GO:

id name namespace
GO:0032869 cellular response to insulin stimulus biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0044255 cellular lipid metabolic process biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-153 Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; fatty acid catabolic process; and triglyceride biosynthetic process. Predicted to be active in cytosol; endoplasmic reticulum membrane; and nucleus. Orthologous to human LPIN2 (lipin 2).

Ensembl:

ensembl_id ENSDART00000141575

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031074 lncRNA upstream 1503 30955780 ~ 30958848 (+) True XLOC_015542
TCONS_00031065 lncRNA upstream 138139 30808329 ~ 30822212 (+) True XLOC_015538
TCONS_00031057 lncRNA upstream 236195 30721071 ~ 30724156 (+) False XLOC_015536
TCONS_00033554 lncRNA upstream 625838 30329405 ~ 30334513 (+) True XLOC_015527
TCONS_00031040 lncRNA upstream 679847 30277334 ~ 30280504 (+) True XLOC_015525
TCONS_00033270 lncRNA downstream 91068 31075576 ~ 31084080 (+) True XLOC_015544
TCONS_00031077 lncRNA downstream 115936 31100444 ~ 31132662 (+) False XLOC_015545
TCONS_00033271 lncRNA downstream 115936 31100444 ~ 31217778 (+) False XLOC_015545
TCONS_00031080 lncRNA downstream 127968 31112476 ~ 31115894 (+) False XLOC_015545
TCONS_00031081 lncRNA downstream 127968 31112476 ~ 31132662 (+) True XLOC_015545
TCONS_00031071 mRNA upstream 438 30916188 ~ 30959913 (+) False XLOC_015542
TCONS_00031073 mRNA upstream 7273 30948503 ~ 30953078 (+) False XLOC_015542
TCONS_00031069 mRNA upstream 52051 30904069 ~ 30908300 (+) True XLOC_015541
TCONS_00031067 mRNA upstream 59231 30894595 ~ 30901120 (+) False XLOC_015540
TCONS_00031068 mRNA upstream 60677 30894694 ~ 30899674 (+) True XLOC_015540
TCONS_00031083 mRNA downstream 324079 31308587 ~ 31363407 (+) False XLOC_015548
TCONS_00031084 mRNA downstream 345850 31330358 ~ 31364659 (+) False XLOC_015548
TCONS_00031086 mRNA downstream 398082 31382590 ~ 31435158 (+) True XLOC_015550
TCONS_00031087 mRNA downstream 453039 31437547 ~ 31452606 (+) False XLOC_015551
TCONS_00031089 mRNA downstream 470054 31454562 ~ 31457860 (+) True XLOC_015552
TCONS_00031072 other upstream 34047 30916200 ~ 30926304 (+) False XLOC_015542
TCONS_00031070 other upstream 38875 30916188 ~ 30921476 (+) False XLOC_015542
TCONS_00031062 other upstream 127376 30786783 ~ 30832975 (+) False XLOC_015538
TCONS_00031039 other upstream 683289 30276217 ~ 30277062 (+) True XLOC_015524
TCONS_00031038 other upstream 690188 30269306 ~ 30270163 (+) True XLOC_015523
TCONS_00031078 other downstream 116580 31101088 ~ 31101573 (+) True XLOC_015546
TCONS_00031079 other downstream 123421 31107929 ~ 31108414 (+) True XLOC_015547
TCONS_00031082 other downstream 286574 31271082 ~ 31330958 (+) False XLOC_015548
TCONS_00031085 other downstream 346415 31330923 ~ 31345196 (+) True XLOC_015548
TCONS_00031110 other downstream 957951 31942459 ~ 31948455 (+) False XLOC_015565

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_11215878_11229028.mRNA True 2984 mRNA 0.50 19 CI01000004 11215682 ~ 11229122 (+)