RNA id: TU430452


Basic Information

Item Value
RNA id TU430452
length 204
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G378687
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22247910 ~ 22248113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttatttattttttatttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaactcacaaccttccggttactagtccaacgctctaaccactaggctaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430451 lncRNA upstream 2583 22244777 ~ 22245327 (+) True G378686
TU430450 lncRNA upstream 4035 22243637 ~ 22243875 (+) True G378685
TU430449 lncRNA upstream 5587 22242108 ~ 22242323 (+) True G378684
TU430448 lncRNA upstream 5945 22241634 ~ 22241965 (+) True G378683
TU430447 lncRNA upstream 6366 22241289 ~ 22241544 (+) True G378682
TU430463 lncRNA downstream 23634 22271747 ~ 22272208 (+) True G378695
TU430468 lncRNA downstream 39224 22287337 ~ 22291508 (+) True G378699
TU430568 lncRNA downstream 177739 22425852 ~ 22498136 (+) True G378780
TU430623 lncRNA downstream 255081 22503194 ~ 22503634 (+) True G378831
TU430665 lncRNA downstream 321213 22569326 ~ 22576116 (+) True G378863
XM_036977053.1 mRNA upstream 26541 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA upstream 26541 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA upstream 26541 22190369 ~ 22221369 (+) True LOC110523432
XM_021602110.2 mRNA upstream 194806 22045971 ~ 22053104 (+) True LOC110523429
NM_001124290.1 mRNA upstream 247402 21997656 ~ 22000508 (+) True LOC100135946
XM_036977064.1 mRNA downstream 520552 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 626057 22874170 ~ 22903435 (+) True dmgdh
XM_036977065.1 mRNA downstream 694092 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977066.1 mRNA downstream 694092 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977067.1 mRNA downstream 694092 22942205 ~ 23007315 (+) False lhfpl2a
TU430417 other upstream 15990 22172535 ~ 22231920 (+) False G378660
TU430418 other upstream 15990 22172535 ~ 22231920 (+) True G378660
TU428818 other upstream 1088991 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1411351 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1489409 20743584 ~ 20758501 (+) True LOC110522816
TU430626 other downstream 255639 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 353997 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 694179 22942292 ~ 23007287 (+) True lhfpl2a
TU432291 other downstream 1375851 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 1385908 23634021 ~ 23637091 (+) True LOC110522832

Expression Profile