RNA id: TU440309


Basic Information

Item Value
RNA id TU440309
length 224
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G387728
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29708790 ~ 29709013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATAATTAATGTTATCTATGCTGGACAAAACCAGAAGTTTTGTTGGTACAATGCCCATAAACTATCAAGTAGTGTTTTCTCTCACTTGATACACACTGTCCTTTCCCTAGGTGATCTGTACAGTCAGAAAAACTAAAGACTGGATATAAGTTAGTAATACCGACAGAGACTAAAGCTATAGCTCACTGGATTAATGTAATGTATATTGTTTGTATGTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440305 lncRNA downstream 7485 29701076 ~ 29701305 (-) True G387724
TU440304 lncRNA downstream 8313 29700166 ~ 29700477 (-) True G387723
TU439914 lncRNA downstream 33940 29674618 ~ 29674850 (-) True G387373
TU439913 lncRNA downstream 34265 29674309 ~ 29674525 (-) True G387372
TU439912 lncRNA downstream 35335 29673236 ~ 29673455 (-) True G387371
TU440453 lncRNA upstream 135430 29844443 ~ 29859826 (-) True G387816
TU440597 lncRNA upstream 459106 30168119 ~ 30211886 (-) False G387939
TU440598 lncRNA upstream 459106 30168119 ~ 30211065 (-) False G387939
TU440594 lncRNA upstream 503679 30212692 ~ 30217966 (-) True G387938
TU440664 lncRNA upstream 568079 30277092 ~ 30277316 (-) True G388003
XM_036977229.1 mRNA downstream 436275 29263213 ~ 29272515 (-) False LOC110523579
XR_005051710.1 mRNA downstream 436275 29263213 ~ 29272515 (-) False LOC110523579
XR_005051712.1 mRNA downstream 436275 29263213 ~ 29272515 (-) False LOC110523579
XM_021602391.2 mRNA downstream 436276 29263213 ~ 29272514 (-) False LOC110523579
XR_005051711.1 mRNA downstream 436277 29263213 ~ 29272513 (-) False LOC110523579
LOC110523591 mRNA upstream 112840 29821853 ~ 29831150 (-) False LOC110523591
XM_021602401.2 mRNA upstream 193974 29902987 ~ 29926603 (-) False LOC110523582
XM_021602400.2 mRNA upstream 193974 29902987 ~ 29976678 (-) True LOC110523582
XM_036977241.1 mRNA upstream 268245 29977258 ~ 29981057 (-) False LOC110523588
XM_021602424.2 mRNA upstream 268245 29977258 ~ 29981191 (-) True LOC110523588
TU439860 other downstream 64042 29603183 ~ 29644748 (-) True G387321
TU439568 other downstream 273479 29434605 ~ 29435311 (-) True G387052
TU439581 other downstream 313974 29393095 ~ 29394816 (-) True G387064
TU439206 other downstream 663632 29009238 ~ 29045158 (-) False G386725
TU439211 other downstream 704035 29003683 ~ 29004755 (-) True anapc2
TU440431 other upstream 112400 29821413 ~ 29824570 (-) False LOC110523591
TU440412 other upstream 112454 29821467 ~ 29824570 (-) False LOC110523591
TU440403 other upstream 112517 29821530 ~ 29824570 (-) False LOC110523591
TU440404 other upstream 113731 29822744 ~ 29824570 (-) False LOC110523591
TU440406 other upstream 113731 29822744 ~ 29828308 (-) True LOC110523591

Expression Profile