RNA id: TU501021


Basic Information

Item Value
RNA id TU501021
length 547
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G442666
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77901782 ~ 77902328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcgattacaggctcaaaatggcaaagatctttcttctgaattcttctgagaaattaaggctattccatgcaagaaattaccaagaaattgccaagatctcgtacaacgctgtgtactactcccttcacagaacagcgcaaactgtctctaaccagaatataaagaggagtgggaggccccggtgcacaactgagcaagaggacaagcacattattgtgtctagtttgagaaacagatgcctcacaagtcctcaactggcagcttcattaaatagtactcgcaaaccaccagtctcaacatcaacagtgaagaggcgactcctgaccttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaataaaagattaaagatgggcaaaagaacatagacactggacagaggaacactgcctagaaggccagcatcccggagtcgcctcttcactgttgatgttgagactggtgttttgacagTTTTCAGAAGAAAgagctttgtttctggccattttgagcctgtaatcgaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501002 lncRNA downstream 19831 77881225 ~ 77881951 (-) False G442649
TU501003 lncRNA downstream 19831 77881225 ~ 77881951 (-) True G442649
TU500996 lncRNA downstream 30727 77870368 ~ 77871055 (-) True G442644
TU500995 lncRNA downstream 33125 77867288 ~ 77868657 (-) True G442643
TU500971 lncRNA downstream 71601 77828733 ~ 77830181 (-) True G442620
TU501019 lncRNA upstream 788 77903116 ~ 77908865 (-) True G442664
TU501027 lncRNA upstream 12597 77914925 ~ 77938931 (-) True znf648
TU501040 lncRNA upstream 40945 77943273 ~ 77943849 (-) True G442676
TU501044 lncRNA upstream 50747 77953075 ~ 77953321 (-) True G442680
TU501060 lncRNA upstream 75315 77977643 ~ 77977982 (-) True G442696
XM_021604443.2 mRNA downstream 26939 77871765 ~ 77874843 (-) True gadd45ab
XM_036978450.1 mRNA downstream 259633 77627457 ~ 77642149 (-) True LOC110524609
XM_021604434.2 mRNA downstream 261988 77627457 ~ 77639794 (-) False LOC110524609
XM_021604432.2 mRNA downstream 284071 77558322 ~ 77617711 (-) True LOC110524608
XM_036978449.1 mRNA downstream 284074 77558322 ~ 77617708 (-) False LOC110524608
XM_021604446.2 mRNA upstream 22887 77925215 ~ 77939001 (-) False znf648
XM_021604447.2 mRNA upstream 81416 77983744 ~ 77987655 (-) True glulb
XM_021604453.2 mRNA upstream 337440 78239768 ~ 78245830 (-) True LOC110524621
XM_021604464.2 mRNA upstream 480677 78383005 ~ 78387067 (-) True hyi
XM_021604478.2 mRNA upstream 1316825 79219153 ~ 79226639 (-) False LOC110524635
TU500657 other downstream 274568 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 494647 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 880407 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 999011 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 1311412 76586458 ~ 76590370 (-) True G441168
TU501172 other upstream 179417 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1062303 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1320812 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1321675 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1828659 79730987 ~ 79731536 (-) True G444691

Expression Profile