RNA id: XM_021605258.2


Basic Information

Item Value
RNA id XM_021605258.2
length 3989
RNA type mRNA
GC content 0.56
exon number 25
gene id LOC110525267
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11955217 ~ 11979397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATTGTTGCGAGGTGGAAGTTTTGACACCGGCGATTGCAAGTCATATTGCCAAACTAAATTGCTATTTTTTGTTTTGAAGTCGGAGTCACAGCAACGATGTTGCAATCATTTTTAACCTGTAAGTGCGTGCAAGTCTGCAAAAGAAAAGGGGGCGTGGTGGTGTTTTGTGGCGAAGATATAATTTAAAGACCGACGAAGGACTTTCAACCTTGACGTTTTAGTTGCTGCTTGTGTAAAATTGTGCCCTTGAAACATGGCTTGTGGGACGGCATAGTGCCAAAGGACCTTCAGCAGCAGTTGTCTCTAATGGTGTATATGCAAACATGAGGATGGTCCATGTCTTGACCTCATTAGTGGGAACCAATTGTGAACTGAAAGTAAAAAATGGAATGGTTTATGATGGAGTGTTTAAAACATACAGCCCAGAGTGTGACCTGGTTCTGGATGCGGCCAACATCAAGAGTCCTGGGCCCAGTGTGGGCCTGCGACAGGAAGATCTCGTGGACAGCATTATCTTCAAGGCTTCCGATGTGGTGGTGGTGCACTTCAGAGACGTGGACTTCAATTATGCCAGAAAAGTCTCTACTGACACAGATAACTTCACGGACACTGCAGTGGGCGGCAGAATCAACGGGGAACACAAGGAGAAGGACCTGGAGCCGTGGGATGGAGGGCGGCAGCAGCACATGGTCTCAGGCAGCCTGGAGTCTCTGGACACAGACGTGTCAAATGGCTGGGACCCGAATGACATGTTCAAGTACAATGAAGAGCAGTATGGCATCAAGTCCACCTACGACAGCAGCCTGTCCACCTACACGGTTGCCCTGGAGCGGGATAACTCTGAGGAGTTTCTGAAGCGGGAGGCGCGAGCGGCCCAACTGGCGGAGGAGATCGAGGCCAGCTCCACCTACAAGTCCCGCGTGGCCCTGGAGAATGACGAGCGCAGCGAGGAGGAGAAGTACACTGCCGTGGTGAGGGGAGAAAGGGAGCAACACACACTCAACAGAGAAAAGTACATTCCCCCGggtcagaggaacagagaggggatGTCATGGGGAGCGGGTCGTCAGAACTCCCCTAGGTTGGTCCAGAGCAGCAGTGGACCTCCCCGGCCAGGTCTTCACGACTACACCCCCAGCTCCGGAGCTGACCAGCGGGTTGTCAACGGAGGTGCCACCTCCTGCCCATCGCCCTCCTCCCGCTACCAGTCaggcccctcccctctcccacccAGGGCGGCCACGCCCACCCGGCCTCCATCCAGACCCCCCTCGCGGCCCTCCCGGCCCCCGTCTCACCCCTCTGCTCACGGCTCTCCAGCTCCCATCTCCACTATACCCAGTAGACGCATGTCCTCAGAAGgcccTCCCAGGATGTCCCCAAAGACCCAGCGTACCCCTCGCACCCACAGAGTTCCCCCCGGGAGTAGAGTCCCCCCGGGAGTAGACTTCATGCCCCACAATGCTCCAGGAGAGGTGTCCGTGCCCCCGGCTACCCGCAGCAGCTCATCCGGTGGCACCTGGTCTTCAGTGGTCAGCGGAGCACACAGACCTCGATCCCCTCGGCAGAACAGCATGGGCGGGGCCTCTCCTGGTCCCTCGCCCCAGACTGGGTCCACTCCCGTGGAACCTGTTAACACATCAATGTCAGCTTCCTCACCTACTGCTAGCCCTGCCCCCAATATGGCCGCCACCTCCTCAGCAGAGGCGAAAGATTCTCGGGTCCAGGCGACGAGACAGAACTCTCCTACGGTCAACAAAGAGAACATGAAACCCCTGGAGAGCCCCCCTAGTATCAACAGACCACTCTCTAAAGGACCCCCCTCCATGGCACCAGACCACAGAAAACAAATAGACAACTTAAAGAAATTTAGTGTAGATTTTAGGTTGCAGTCCAGCTCTAACCCAGACCCACAGTTTCAGCAGATGGTGACTAAGCCTCCGCAGGACACGGGAGAGAAGTCCAAGCAGCTTCCTCTGGATAAGGGGTTGGAGGGGTCTGAGGGCCCTGTGGTCCCCGCCAGGAGCAACAAGCCAGACAGCCCTGGCGCATCatccccctccctgtcctctacccTCTGTCCCGCCCCGGAGCAGAACAGGGGGCCTGACGTGACCTCGCAGGGTGTCCAGACATCTGCACCCAACTTAAGCGGAGGAGCCAAGCCTGAAGACAAGGAAGAGGATGAGGCAGATCAAATGAGAAAGTCGACTCTGAATCCTAATGCCCACGAGTTCAAACCCAGGGTCTTCACTCCTCAGcCAAAGCCGGCCACCACCCCAACCCCCCCTCGGCCCCAAGGCCAGCCCAGCCCCTCTATCGTCATGCAGCAGCCTCAACAGGTCTACTTTCCCCAGATGTACCCTCTGACCCCTGTCAGCCCTGGAGTCCAGAAAAGCATTATCTGGAAGTCTCCAGCCATGTACCACGTCCAGATGCCTCATATGACGCTGAGCCAGTCCAAGCCCTACAGACCAGGTAAAGTATCCAACATGCCCCAGCAGAGGTCAGACCAGCACCACCCCCAGGGCACGCCCACCATGATGCACCCGGCCGCGGGGCCGCCCATCGTGGCCCAGAGCCCTGCCTACTCAGCCCAGTACTTCACGTGTAGCCCACAGCAGTTTACCAGCCAGCAACTGATGCCCCACTACCAGTCACAGGCCCAGCATGTGTTCAGCCCGGTGATTCAGGGTCAGGCCAGGATGATGGCCCCTCCCACCCACGGCCACCCTGGCCAGCTGGTCTCTTCCACCACCCAGTATGGTGAACAGACTCACACCATGTACGtgtCACAAGGCCCCATGCCGCAGCAGTACGCCCACCCCAATACCACACTGCATCCCCACCCCCAGCCCTCGGCCACCCCCACAGGCCAGTCCCAGCAGGGCGTGCAGCACGGTGGCAACCACCCGGCCCCCAGCCCCGTCCAGCAGCACCAGGCTGCTGCAGCTGCCCAGGCCCTGCACATGGGCAACCAGCCCCAGCAGCAGATGTACCAGGCCCtggcccccaccccaccctccatgACCCCGGGGCCCAACCCCCAGTCCCCCCAGGGCAGCTTCTCCTCGGCCCAGCAGGCAGTCTACCTCCACCCCCAGCAGATGCAGCACGGCTACAACCCCTCCCACATGGCCCACATGCAGCAGGTGAGCTCCACCTTCAGAAGCCCTTCCCTTCACTCTGAGTACATACTATATGAGCAGGCCCATATCCAGTCTGGGATGGTGCCGTCCCACCATGGTAACCCTGGCCACCCTCAGATGATGCTTATGGCCACCCAGCAGCAAGGTGGCCCCCAGCCCCAACTCGCCCAGAATGCCCTCAACCCCATCCCAGTGTCCTCCACTGCTCACTTCTCTTACTTGGCTCACCCCCAAGTACAACAGCACCATCAGCAGCAGCTGTAGAGGGTACTGTGGAGAACATGGACCCCTCTACCACCCTCGCTCTCGGAGTCTTCACACAGAGAATCCACACAGCTCTCATCATGCTACATGTGCGTTCCTCTCCCAGTCAGAATGTTCAGATTGTTACAGTGGACAGAGGTTTTATTAGTTTAGAGTTGTGCTGATAACAGAAAGGACTCctttcccccccacacacacacctaagtGGAACTTGATTTGGCTTGCCAATTTAAGAATTgagaatgtaaaaaaaataccgGAGCTTGCATTATGTCTGCACCTTGATATGAAAATTCTTCCGACTTGGACAGTTTTAAAGTGACTGTTTAATTGCTGCTACTATTGCTGCATTCAAGACTTAAGAACAGGTTCAAACCAAACTAAAACAAATTAAAATCTTCCTGTAATTAATAACAAGTTTGGCTAAAAGGACTGAAGTATTATTTATGAATTGATGGCTAAGGTGATCCCACTTCCCACCTGACCATTATGGAACTTAAGTTAAAATACAGTTTACTTTGTAGATATCCATTaaaaaaattaggaaaaaaataaAAGTTTTAAACTGGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539506 lncRNA downstream 5829 11949051 ~ 11949388 (-) True G474535
TU539556 lncRNA downstream 18670 11936283 ~ 11936547 (-) True G474583
TU539550 lncRNA downstream 26782 11928221 ~ 11928435 (-) True G474577
TU539549 lncRNA downstream 27594 11927384 ~ 11927623 (-) True G474576
TU539543 lncRNA downstream 38470 11916517 ~ 11916747 (-) True G474571
TU539578 lncRNA upstream 30909 12008802 ~ 12010106 (-) True G474605
TU539587 lncRNA upstream 41829 12019722 ~ 12019950 (-) True G474609
TU539605 lncRNA upstream 80149 12058042 ~ 12058479 (-) True G474627
TU539619 lncRNA upstream 118591 12096484 ~ 12096832 (-) True G474641
TU539628 lncRNA upstream 144729 12122622 ~ 12123474 (-) True G474646
XM_021605246.2 mRNA downstream 132607 11808873 ~ 11822610 (-) True hsd17b4
XM_036979395.1 mRNA downstream 233872 11629016 ~ 11721345 (-) False LOC110525095
XM_036979396.1 mRNA downstream 233872 11629016 ~ 11721345 (-) True LOC110525095
XM_036979398.1 mRNA downstream 233873 11629016 ~ 11721344 (-) False LOC110525095
XM_036979414.1 mRNA upstream 62634 12040527 ~ 12063287 (-) True LOC110525269
XM_036979416.1 mRNA upstream 125362 12103255 ~ 12139439 (-) False rasef
XM_036979417.1 mRNA upstream 127919 12105812 ~ 12139444 (-) True rasef
XM_036979415.1 mRNA upstream 161725 12139618 ~ 12157601 (-) False LOC110525271
XR_005052018.1 mRNA upstream 161725 12139618 ~ 12157601 (-) False LOC110525271
TU538887 other downstream 212459 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 353220 11601515 ~ 11601997 (-) True G473930
TU538397 other downstream 570771 11379527 ~ 11384446 (-) True LOC110525252
TU537285 other downstream 1475371 10476409 ~ 10479846 (-) True G472576
TU537244 other downstream 1579140 10373852 ~ 10376077 (-) True G472539
TU539592 other upstream 51266 12029159 ~ 12029610 (-) True G474614
TU539726 other upstream 446568 12424461 ~ 12425235 (-) True LOC110525279
TU540491 other upstream 974359 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 1051492 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 1219422 13197315 ~ 13198012 (-) True G475573

Expression Profile