RNA id: XM_036979935.1


Basic Information

Item Value
RNA id XM_036979935.1
length 3434
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC110525788
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32883925 ~ 32924410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGGCGCTAGCGGGGTAGCGAGATAGCGATCGTAGTTCTGAGCCATCTGAAGGGATTAGCGCTATGTGTATTTGATCGTTGGGGATATGGCGCATTTGAACAGAAGGACTATTTTGTCTGCTGCATTATGACTGGAtttctagccagctaactagctttCGCTAATTGCATTGCAGAGTATATTTATATTAAACGTTACGTCGTGTTGCTTATTGAAACACACATCCCGCAAGGAATTGTGAATTTAGATTGCATGCCAGAGTCTTAACTAGCTACGACAGCTAAGCAAGCCACTCCTGATTGTCTCATGTTTTGCTGTCTTATCGATTTGGCAACACTCGCTTGGCCACGTCTTATCAATTTGTGTATTTTAGTTTTCTCGTGGTAAACGCCAGCCTctccctagctaacgttacccAACGACTTGGTTGCTAAATGTCGGAGAAGAGTTCGAACTCGTCGGGCTCCGATGAAGATGTGGATCCCGAATCTGGGCATCCTGTTGAACTCGGTGGCGTCCTAAGCAAGTGGACCAACTACATTCACGGATGGCAGGACCGGTGGGTAGTGTTGAAGAACAACACTCTGAGCTACTATAAGTCAGAGGATGAGCGGGAGTACGGCTGCAGGGGCTCTCTGTGTCTCAGCAAGGCGATCATCACAccccATGAGTTTGATGAGTGTCGTATTGACATCAGTGTGAACGACAGTGTGTGGTACCTACGGGCAGAGGACCCAAAGCACCGCCTCCGATGGATTGACTCCATCGAACTACATAAGgTGGAGTCGGGGTATGGTTCAGAGTCCAGTCTGAGGCGTCATGGTTCCATGCTGTCTCTCACGTCCGCTGCCAGTGGCTTCTCcgccacctccacctcctccttcaaGAAGGGCCACAGCCTGCGGGAGAAGCTGGCGGAGATGGAGACGTTCAGAGACATCCTGTGCAGACAGGTGGACACGCTACAGAAGTACTTTGACGGCTGCGCAGACGGCGTCTCCAAGGACGAGTTCCAGAGAGACAAAGtggaggaggatgaagatgacTTTCCCACAAGCACGCGTCCCAATGGTGACTGCCTTCACAACAACAACGGCAGCAAAGAGAAGCTGTTTCTCCCTGCCAGTCCTAAGGGCATGAATGGGATCGACTTTAAGGGCGAGGCCATCACGTTTAAGGCCACTACAGCTGGGATCCTGTCTACCCTGTCCCACTGCATCGAGCTCATGGTGAAGAGGGAGGACAGCTGGCAGAAGAGGCTGGACAAGgagctggagaagaggaggagggtggaggatgcCTACAAGTCGGCCTTGAGTGAACTGAAGAAGAAATCTCACTACGGAGGCCCCGACTACGAGGAGGGTCCTAACAGCCTCATCAATGAGGAGGAGTTCTTTGATGCGGTGGAAGCTGCCCTGGACAGACAAGACAAGATAGAGGAACAGTCAGAGAAGGTGAGGATACCCAGACTGACCCCCGTCCCCCCTGGAGACGCATACTCCGTCATCGGGACACACCGCTTTGCCAAacagCCCCATAGCTActcttcctccctgtcctctgttGAATTAGTCAGTGCCTCAGATGATGTTCACAGATTCAGCacacagGTGGAGGACGTGGTTCAGAATCACATGACCTACTCCCTGCAGGACATGGGTGGCGACGCCAACTGGCagctggtggtggaggagggcgAGATGAAGGTgtacaggagagaggtggaggagaacgGCATCGTTCTGGACCCTCTGAAAGCCACCCATGCAGTGAAGGGTGTGACCGGACACGAGTTGTGCCACTACTTCTGGGACACGGACGTACGCAATGACTGGGAGACCACCATTGAAAACTTTAACGTGGTGGAGACGCTCTCAGACAATGCTGTTATAGTCTACCAGACACACAAGagagtATGGCCTGCCTCTCAGAGGGATGTCCTCTACCTATCAGCTATCAGGAAAATCCTGGCGACCAATGAGAATGACCCAGACACGTGGCTGGTCTGCAACTTCTCTGTAGATCACGATAACGCCCAGCCCACCAACCGGTGTATCCGTGCCAAAATCAACGTGGCCATGATCTGCCAGACCCTGGTGAGCCCTCCAGAGGGCAACAAAGAGATCAGCAGGGACAACGTCCTCTGTAAGATCACGTATGTGGCCAACGTGAACCCTGGAGGCTGGGCCCCTGCCTCAGTCCTCAGAGCCGTGGCCAAGAGGGAATACCCCAAGTTCCTCAAACGCTTCACCGGCTACGTCCAGGAGAAGACCAGCGGAAAACCTATCCTCTTCTAAATCTCACCGGTGTTGGAAGGCGAAACACCTTTTTGTCCTGAAGAGATATGGGCTCCcacagactacattacccattcATCTGTCAACCGGAATTTCTTTACAAATCATCCAGAATGTTCCAGATGAAATAATCGTATCAGACTGATTTAGGGCTTTAATCCATCAGTAGTTGCTAGCCACCTGAGCCACAAAAACATTGTTAAACTGTCCATGGATGTGTTTGTATATAAATTCAAGAATTTCTGAAACGACAGAACCAATCTTTTTGTAAATTGTTTTGTAAATAATTTCGGACTATACTTTTTAGTTTGCTTTAATCACTGATTATCACAGTCTTTTCATGCTGTTAATTTTCACTACAAAGAAGGAAACTGAGTAGAGGCAAAGTATGGCtaaccttctcctctccctctagtgACGACCTGTGGTCTGATGGGGGGAGGGAGTCCAAAGCTTTGTACACTCTTTTTTTGGCTAAAATCTCTATATTTGTAGATCATTATAGCTGTAAAGGAGCTCTATGGATGTGATGTATTATACAGAGGCCGAGATAATTAGTTTACCGGTCGGTGTATGTGAATTGACTTAAGGCAACCTGGAATTGGAAGAACAAGTATTGTCATATGTTCTTTGATTTGACAGTATGGATGGATAAGATTGAAGTAATCTGTTGAATGTGACCCAGCAACACTATCAAGTGTTGGTTGCCCCCTCCCTCACTGTTTTGTCCAAGTAACATACACATACAGCTTATATGGCTGATATATGTTGTTGGGAGGGCCGTTTCTACATGACATTTCACATCCCGACACGATGCTTTCGACACCAGGAAAAATCCACAGAGCTCATCTATCTACTACAGTATAATATGACCAGATGTGCTTTTAGATTGAGACTAAACATTTCACACCTCAAGATTGTGCAATCAAAAAGTCTGTAAAGCTGAGGGCAGAATCTTCCAATCAGCTTCTCAGAATCCATGGGGAAACATCAGCTGAATACATTTGTCTTGAATGTTCTATATAAAGAATGGGCACACTTTGTATATTTCTAAGTCCTCTTAAGTGTTATTTGCACTAAATAATGCAATTGGACAATGTTCGATAAATTAAAATCGCTACACTACAGAAA

Function

GO: NA

KEGG:

id description
K08283 COL4A3BP; collagen type IV alpha-3-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565409 lncRNA downstream 56984 32825857 ~ 32826944 (-) False G497663
TU565411 lncRNA downstream 56984 32825857 ~ 32826944 (-) True G497663
TU565297 lncRNA downstream 220675 32658242 ~ 32663253 (-) True G497573
TU565239 lncRNA downstream 271410 32588068 ~ 32612518 (-) True G497518
TU565121 lncRNA downstream 367426 32508687 ~ 32516502 (-) True LOC110526888
TU565450 lncRNA upstream 2899 32927309 ~ 32927532 (-) True G497698
TU565451 lncRNA upstream 3183 32927593 ~ 32930771 (-) True G497699
TU565463 lncRNA upstream 13474 32937884 ~ 32938314 (-) True G497704
TU565466 lncRNA upstream 17804 32942214 ~ 32942494 (-) True G497707
TU565467 lncRNA upstream 19791 32944201 ~ 32944747 (-) True G497708
XM_021606215.2 mRNA downstream 123977 32750665 ~ 32759951 (-) False LOC110525787
XR_005052067.1 mRNA downstream 123977 32750665 ~ 32759951 (-) True LOC110525787
XM_021606212.2 mRNA downstream 153252 32690707 ~ 32730676 (-) False LOC110525785
XM_036979931.1 mRNA downstream 153252 32690707 ~ 32730676 (-) True LOC110525785
XM_021606214.2 mRNA downstream 153253 32690707 ~ 32730675 (-) False LOC110525785
XM_021606224.2 mRNA upstream 22624 32947034 ~ 32961409 (-) False LOC110525792
XM_021606223.2 mRNA upstream 22624 32947034 ~ 32962214 (-) True LOC110525792
XM_021606227.2 mRNA upstream 149291 33073701 ~ 33076106 (-) True LOC110525797
XM_021606229.2 mRNA upstream 174656 33099066 ~ 33103756 (-) True LOC110525798
XM_021606232.2 mRNA upstream 190286 33114696 ~ 33125242 (-) False LOC110525800
TU565305 other downstream 201081 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 991279 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 1212001 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 1222310 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 2308355 30575118 ~ 30575573 (-) True G495560
TU566350 other upstream 403097 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 408240 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1115949 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 2840956 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 3583646 36508056 ~ 36517268 (-) True hk2

Expression Profile