RNA id: TU550351


Basic Information

Item Value
RNA id TU550351
length 721
RNA type TUCP
GC content 0.44
exon number 2
gene id G484232
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20588262 ~ 20608736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagattttccaagctttaaacatcccaaggaacactgtgcaagcgataatattaaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagttgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatacccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550343 lncRNA downstream 2042 20584221 ~ 20586220 (-) False LOC110525433
TU550226 lncRNA downstream 72027 20476734 ~ 20516235 (-) False G484136
TU550227 lncRNA downstream 72027 20498861 ~ 20516235 (-) True G484136
TU550233 lncRNA downstream 109052 20477867 ~ 20479210 (-) False G484137
TU550234 lncRNA downstream 109052 20477867 ~ 20479210 (-) True G484137
TU550372 lncRNA upstream 15939 20624675 ~ 20631356 (-) True G484249
TU550385 lncRNA upstream 32454 20641190 ~ 20645048 (-) True G484262
TU550536 lncRNA upstream 371660 20980396 ~ 20980643 (-) True G484400
TU550548 lncRNA upstream 395309 21004045 ~ 21004375 (-) True G484410
TU550549 lncRNA upstream 395747 21004483 ~ 21004764 (-) True G484411
XM_021605528.2 mRNA downstream 5257 20566415 ~ 20583005 (-) True LOC110525430
XM_021605520.2 mRNA downstream 36956 20537756 ~ 20551306 (-) True zgc:152968
XM_021605521.2 mRNA downstream 42518 20537756 ~ 20545744 (-) False zgc:152968
XM_036979568.1 mRNA downstream 42786 20537756 ~ 20545476 (-) False zgc:152968
XM_021605505.2 mRNA downstream 125042 20453018 ~ 20463220 (-) True LOC110525421
XM_021605061.2 mRNA upstream 47759 20656495 ~ 20670677 (-) True LOC110525114
XM_021605542.2 mRNA upstream 79408 20688144 ~ 20699512 (-) True LOC110525438
XM_021605540.2 mRNA upstream 104968 20713704 ~ 20726969 (-) False LOC110525435
XM_021605539.2 mRNA upstream 104968 20713704 ~ 20726970 (-) True LOC110525435
XM_021604959.2 mRNA upstream 119263 20727999 ~ 20730282 (-) False hint2
TU550345 other downstream 2615 20584221 ~ 20585647 (-) False LOC110525433
TU550275 other downstream 148578 20439307 ~ 20439684 (-) True G484175
TU549918 other downstream 652536 19933244 ~ 19935726 (-) False G483875
TU549031 other downstream 867646 19710075 ~ 19720616 (-) False G483145
TU549032 other downstream 867646 19710545 ~ 19720616 (-) False G483145
TU550546 other upstream 398280 21007016 ~ 21009082 (-) False G484409
TU550547 other upstream 398280 21007016 ~ 21009082 (-) True G484409
TU550627 other upstream 511240 21119976 ~ 21121067 (-) True LOC110525458
TU551014 other upstream 687844 21296580 ~ 21298173 (-) True G484807
TU551114 other upstream 823194 21431930 ~ 21434719 (-) True G484895

Expression Profile