RNA id: TU550385


Basic Information

Item Value
RNA id TU550385
length 3779
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G484262
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20641190 ~ 20645048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGCATTGTATAAACATTTGTGCAGTGTAAATTAACTAAAAGTTATGGATTACTTTTGAAATAGTTTTGCACCAAACATGACGATTGTCACTTTCagcagcaaaaaaatatatatctcagAAGTAACATGAAATGTCTGTTAGTCGGTGACTGAGAAACTTACACGCAATGACATGTGAACAGTATACAGTTGCTACACTGCTTAAAACAAAAATCCGTAACGTTTAAGTACATTTCTGAAATAAAAGGATGTATGGCACCAGCGTTCTTCTTCCCTGAAGGAGGGCTTCATTCATCTATGGGTTAGATTGAGAGTACACTTCCCTTGTTCCTGTTCTGGCACCAAGGCAATCTCCCTACACATGTACACAGATAGTCAGCCTTCCAATTAATCACTCCAGTTTGACAAAACTGTGCATTAGCTGCACAAAAATAGGTCTACATTagcttattatcctacacacacacacattcacaaccaTGAAGGAATTCTCTCAGAACATTTGGGGACTTTGCTACCCTCACTGATGGATCAATATCTCACATTATGAACCAGCTTTACAAGATGTATTTCTCTGTGAGACAAACATTTCATGATACAAACTGAACATGTGTGCGATAACCCCCGTTGAATATTAAAAAATAAACTGTACTTAGAAATGAAACACGACCACAAAAAACGTACACTCGGGACAAATATAACAATGAACATATGGATACATAAATATTGTGTCAGATTAAAAAACTTTTATATAACATTTTACATAACCTTGTATTGCTGCGTCAATACATAACTCAGTTTTTCCCCTTCACATTAGAGATGCATTTTAACCCTTTGAAGTTCGCTTAATATTAATAATCCTTATCAAATTGTAAAAACTACATGTTTTGGCCTTGATGGGAGAAGCACATGACTCAAACACTGTTGTAAATACACTGCATTTGGAATGCATCCAAAACAGCAacttattccctatacagtgcaatACCTTTGACCAGGGGGCACTATCTTTGACCAGGgggcactacctttgaccagagcctgtgggccctggtcaaaagtaatgcactgtaAACGATATAGGGTGCAATTCCAGACGCAGCCATAGTATAGAAGGTAGGCAGACGGTGGTGGCGGCACAACCGTTATCTCTAAATTGAGTAAACACGAGCTGGAACCGATCTATGTAGGTTATCTTTGGTCAAGCACAGGGGAGCGAATGGACTTGAATGATTGGGTACAAAAGGTGAATGGGACTAGTCAGTCAGACAGTGGTAAGTATTGGCTCAGGTGTATGCGTGTGTGCACGCGCACACAACACAGTTCAGGTTTAAGGTCTTATAGATTCAAGTCAATAAGGATGGTAAGATATACTGTGATGATTAAACAAGTAAGCAATACATGCACAAGGCCATGATTGCTTGTATATAGATTGAGCTGAAAAGGCCTACTGTTTATTGGTCCTTGACATATAATATAACCAGGACCAAAGTTTGAGTAGATGCCCAAAGCCATGTCTGACAAACGTCCTTAATTGCACAACCAAACTCATgcttgaaaaaaaatatatatatataaaatttgTTTACTAGGGCATCCCATCTAGAACTCCAGAGTTTCCAGTTGAACAAACCCTACAAATCACCCACAGAAACAAGTATTACAAATATCAAAATGATCTCAATATGGACAATTCCTCATGTTACAATGTGTTGCTATCTATAGTTGTGTGCTAATCACAGTAAATGACAGCAAGCTTTGGGCATTGTATCCTGCTCAAATATTCTTCAATATTTAAAGAGTTGCTTCACAGAGACCAGACATAGCAATTCAGAAGTTGATACTGGTTTCTGTTGGAACAACCTTAAAAACAGAATATGAGCATGGATGGCTCATCCATATAAAAAATACAAGTCCATAGGTTATGGCAATTAATAGCAGCAATAAtagatacaaataaaaaaatcatattCAATGTACTGAAAAGCAAGTAACAAAGGCAAAGTGTCCATCTAGAATAACACCTCAGGAACCACATTGAAAAACAACCCTGGGGCAAACTACTGAAATACACAGAAGGACCCTTGCATTTTATATAACAACCCAAAAAATACAGGGCACGTTCTTTTTTTGGGGAAAGTGCAGGAATTTTCAAGTTGACAGTATTATGGCCTTAGTTCATTTTTTCCAGAAGCAACTGCCAAAAGGCTTGACACAACACAGAGACTAGTGACcaaaatggcaaaaaaaaaaatcaaaacatcAGACAAAGAGTGATTCAAGTGCCATGTTCGTCTGAATATCTACAGCTCCTTGGCAAGCCAGTTGACTCTGACATAACATGCACAGCAGAAGCGGTGTGCATGGCCCGATTGTTTATTCTACAATTCACCTGCGTTTTTTTTTTACGGCGCACCAGTCGATGTTTCTAACAGTGTTTCGTCTTTATGTGAAAACCTGGTCACCTTGTTATGAGGACTGTACTATCAATCCAAATTGTGCTTTCTCCAAGTATTGATGCAGACACACAAAGTGGGTCCACACTGATGTTAAAAAAATGGTGTCTTTGGCACACCTGTGACTACTTGCTGGATTAGGTCAGAGGTAGCCAGACATTTCCCCCTTGCATATGTACAACTATTAAGATATCCAGCTTTTTACCATATCAACAAAGAAACACAGAAAATTGTAAGGCAGAAAGTAGGTTCAAGTCTCCCTTATAAGTTTTGTGGGTATGTTTCTTTTCTTACAATTTCAATATGAGATGAAAGTTAAGGCCTTTCCTGAATGGGAAAGCAGCTATTTACTAATGCCTTATCTGAGGAAATGTCTAAGGTttagaaaaaaaatctgtctcaaACTAGTGTTGGGAAAGGTGAAGGGAAAGGGAAAAAGAGCTAAATGTCTAGTTTCTCAGTTGTCATACTGCATGGtaagacatgcacacacaaactgtCACAAATTCTATTTGATAACAACTTGGGTGTGTGCACTGACGGATTCATCCCTGGAAAATAAAATAAGTAGTCAATTTCTTTTTTCTTCAAAAAGGATATGCTAAGTACAGTTTTACTAGCAAAACCACTTATATTCTGAGTCAGTGAATACTCAGTTACAGGGAGAGAAGAATACCAGATGTTTTAATCTGGTGGCTGTTTGAGGTGACCTCACAAACACTGATACAAAGAAATGTTTCAGGACCCTCTAGTCTTCATTAAATCAGGTGAAGACTACCCATCAGTCAGTAGAACGCTGATAGTGACTGCTCAGTGGTTGTTATTAATTAGTGAGAATACTGCCTAATTTGATACTTATTCCCTCgcagaaaatactcaaaaaagCTTTGTCCTGGCTGTCCAAGTGTTCCTTCATGAACCCAGCACTGAGCccaacagaacagagacagaagtgacagtaggagtagtagtagtagtagtagacaggaGTTGTTGTTTTGCACTATGGCAGGCAGAAAGACCATGCTCAGCAGGATAGTCAAGAGCATCATTGAGATGAGCAGCATCTTGATTGACATGGACATTTATTGGGGTGGTTGCCCAAAAGTGAAAACCCCTGTCCGCACTGAAAAACCCTGCCTTGGTTATAATGCTCCGCCTGCCCCGCCACACAATGCAGCCTGCATCAACACTTCTGAGCCTCCACGGGAGACATGGCGATGTAGGAGCCGTTCCTCATTGGCTGGTTGGTATAGTTGTTTTCTGATGGTTCAACCTCTGGTTTGTCGCTGACTTGAGTGTAGGCCGTTTCATCTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550372 lncRNA downstream 9834 20624675 ~ 20631356 (-) True G484249
TU550346 lncRNA downstream 50063 20589234 ~ 20591127 (-) True LOC110525433
TU550343 lncRNA downstream 54970 20584221 ~ 20586220 (-) False LOC110525433
TU550227 lncRNA downstream 124955 20498861 ~ 20516235 (-) True G484136
TU550233 lncRNA downstream 161980 20477867 ~ 20479210 (-) False G484137
TU550536 lncRNA upstream 335348 20980396 ~ 20980643 (-) True G484400
TU550548 lncRNA upstream 358997 21004045 ~ 21004375 (-) True G484410
TU550549 lncRNA upstream 359435 21004483 ~ 21004764 (-) True G484411
TU550545 lncRNA upstream 361968 21007016 ~ 21009082 (-) False G484409
TU550562 lncRNA upstream 379794 21024842 ~ 21025595 (-) True G484423
XM_021605535.2 mRNA downstream 28589 20603073 ~ 20612601 (-) False zgc:158260
XM_021605534.2 mRNA downstream 28590 20603073 ~ 20612600 (-) False zgc:158260
XM_036979570.1 mRNA downstream 33805 20603955 ~ 20607385 (-) True zgc:158260
XM_021605533.2 mRNA downstream 33807 20603073 ~ 20607383 (-) False zgc:158260
LOC110525433 mRNA downstream 49602 20584162 ~ 20591588 (-) False LOC110525433
XM_021605061.2 mRNA upstream 11447 20656495 ~ 20670677 (-) True LOC110525114
XM_021605542.2 mRNA upstream 43096 20688144 ~ 20699512 (-) True LOC110525438
XM_021605540.2 mRNA upstream 68656 20713704 ~ 20726969 (-) False LOC110525435
XM_021605539.2 mRNA upstream 68656 20713704 ~ 20726970 (-) True LOC110525435
XM_021604959.2 mRNA upstream 82951 20727999 ~ 20730282 (-) False hint2
TU550351 other downstream 32454 20588262 ~ 20608736 (-) True G484232
TU550345 other downstream 55543 20584221 ~ 20585647 (-) False LOC110525433
TU550275 other downstream 201506 20439307 ~ 20439684 (-) True G484175
TU549918 other downstream 705464 19933244 ~ 19935726 (-) False G483875
TU549032 other downstream 920574 19710545 ~ 19720616 (-) False G483145
TU550546 other upstream 361968 21007016 ~ 21009082 (-) False G484409
TU550547 other upstream 361968 21007016 ~ 21009082 (-) True G484409
TU550627 other upstream 474928 21119976 ~ 21121067 (-) True LOC110525458
TU551014 other upstream 651532 21296580 ~ 21298173 (-) True G484807
TU551114 other upstream 786882 21431930 ~ 21434719 (-) True G484895

Expression Profile