RNA id: TCONS_00033894


Basic Information

Item Value
RNA id TCONS_00033894
length 670
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_016699
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39826704 ~ 39827511 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTGTGGTCATCTCCTCTTTGCTTTTCAAGTCCATcgacatacatggtgagctaataggacaaactggttacagcaggAAATCGGTCTTTACGAAAaatgagcctatgttggatatTTGTATAACTGGGACATGGAGCATTTCCAGAAGATTGTGAAGTTGCAGTCATGAGAAAAGTCTGGTGGCCAAATGTGCTCACACCTGTTCTGGTGCAGCATTTGCTTAAGAGTGTGATTCTGTTCCAGGACTGCTTCATCCTCAATATCACATTACTGGATTGCATTCAAGACAGTTTGTGCTTTTTGGAAATCATGAGATATGTTGACTGAAGAAGTGtctgaattaaaaaaatgacACGAGAGCACATATAACATCCAAGAGAAACATTCAGCAAAAGCTGCTCTTTTACAgcagaataaaaaatacttttagcattttgtattttgctttgttttgtagtAAAGGTTTTCAATTATTAtgcataaaaaaagaacaaattcgCTAAATTTACCAACAGAATACTGGtatattttcctgtttttgttaaattatttttccCGCCTAACTGAACATACATTGTTGCTTTAATAACTCTAAAGTTGTTTATATATTCCCAAGGAATATATAACAGATCaaggttttttttgttgttgttgttgtttgtttggct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033893 lncRNA downstream 74148 39734569 ~ 39752556 (-) False XLOC_016698
TCONS_00032775 lncRNA downstream 88806 39734569 ~ 39737898 (-) False XLOC_016698
TCONS_00033386 lncRNA downstream 214240 39610321 ~ 39612464 (-) True XLOC_016697
TCONS_00032767 lncRNA downstream 740130 39082296 ~ 39086574 (-) False XLOC_016693
TCONS_00032761 lncRNA downstream 811600 39012920 ~ 39015104 (-) True XLOC_016690
TCONS_00033895 lncRNA upstream 3174 39830685 ~ 40033026 (-) False XLOC_016700
TCONS_00033896 lncRNA upstream 3174 39830685 ~ 40033058 (-) False XLOC_016700
TCONS_00033897 lncRNA upstream 19186 39846697 ~ 40033026 (-) False XLOC_016700
TCONS_00033898 lncRNA upstream 109053 39936564 ~ 40033058 (-) False XLOC_016700
TCONS_00033899 lncRNA upstream 178580 40006091 ~ 40033002 (-) False XLOC_016700
TCONS_00032774 mRNA downstream 67645 39731284 ~ 39759059 (-) False XLOC_016698
TCONS_00032773 mRNA downstream 150875 39584066 ~ 39675829 (-) True XLOC_016696
TCONS_00032770 mRNA downstream 268061 39549376 ~ 39558643 (-) False XLOC_016695
TCONS_00032771 mRNA downstream 268061 39556258 ~ 39558643 (-) False XLOC_016695
TCONS_00032772 mRNA downstream 268061 39556613 ~ 39558643 (-) True XLOC_016695
TCONS_00032780 mRNA upstream 240310 40067821 ~ 40136018 (-) False XLOC_016701
TCONS_00032781 mRNA upstream 242128 40069639 ~ 40136024 (-) False XLOC_016701
TCONS_00032782 mRNA upstream 242445 40069956 ~ 40135942 (-) False XLOC_016701
TCONS_00032783 mRNA upstream 304181 40131692 ~ 40136018 (-) True XLOC_016701
TCONS_00032784 mRNA upstream 354122 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032776 other downstream 74148 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032769 other downstream 455777 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032764 other downstream 758158 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032743 other downstream 1621911 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032691 other downstream 2417547 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032777 other upstream 99450 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other upstream 181227 40008738 ~ 40026622 (-) True XLOC_016700
TCONS_00032779 other upstream 240297 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032787 other upstream 717435 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032788 other upstream 767864 40595375 ~ 40595494 (-) True XLOC_016708

Expression Profile

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