RNA id: TCONS_00033899


Basic Information

Item Value
RNA id TCONS_00033899
length 432
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_016700
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39830685 ~ 40033058 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATAGGCAATCTGTTTACATGAAAGCTGGGTGACTCTAGAGTCTAGACAATACTGCAGATCAGACTGCTATCAAGTTTATTCCTGACTGAGCTATTCGGACCACAGAGGACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGagtAGCAGTTGAGCAAGTACTTCTGGAAAGACAAAGTGACTGGTGTTCCACTAAAAGAATTGCCTCTTTTAATTAAAAAGCATGAAGTATTTC

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022414 reproductive process biological_process
GO:0000075 cell cycle checkpoint biological_process
GO:0000077 DNA damage checkpoint biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031570 DNA integrity checkpoint biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0033554 cellular response to stress biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033894 lncRNA downstream 178580 39826704 ~ 39827511 (-) True XLOC_016699
TCONS_00033893 lncRNA downstream 253535 39734569 ~ 39752556 (-) False XLOC_016698
TCONS_00032775 lncRNA downstream 268193 39734569 ~ 39737898 (-) False XLOC_016698
TCONS_00033386 lncRNA downstream 393627 39610321 ~ 39612464 (-) True XLOC_016697
TCONS_00032767 lncRNA downstream 919517 39082296 ~ 39086574 (-) False XLOC_016693
TCONS_00032785 lncRNA upstream 161065 40194067 ~ 40196570 (-) True XLOC_016703
TCONS_00033387 lncRNA upstream 165815 40198817 ~ 40199412 (-) False XLOC_016704
TCONS_00032786 lncRNA upstream 165815 40198817 ~ 40199780 (-) True XLOC_016704
TCONS_00033901 lncRNA upstream 172906 40205908 ~ 40211792 (-) True XLOC_016705
TCONS_00033902 lncRNA upstream 500961 40533963 ~ 40534863 (-) True XLOC_016706
TCONS_00032774 mRNA downstream 247032 39731284 ~ 39759059 (-) False XLOC_016698
TCONS_00032773 mRNA downstream 330262 39584066 ~ 39675829 (-) True XLOC_016696
TCONS_00032770 mRNA downstream 447448 39549376 ~ 39558643 (-) False XLOC_016695
TCONS_00032780 mRNA upstream 34819 40067821 ~ 40136018 (-) False XLOC_016701
TCONS_00032781 mRNA upstream 36637 40069639 ~ 40136024 (-) False XLOC_016701
TCONS_00032782 mRNA upstream 36954 40069956 ~ 40135942 (-) False XLOC_016701
TCONS_00032783 mRNA upstream 98690 40131692 ~ 40136018 (-) True XLOC_016701
TCONS_00032784 mRNA upstream 148631 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032776 other downstream 253535 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032769 other downstream 635164 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032764 other downstream 937545 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032743 other downstream 1801298 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032691 other downstream 2596934 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032779 other upstream 34806 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032787 other upstream 511944 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032788 other upstream 562373 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032799 other upstream 1178976 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 1388604 41421606 ~ 41421722 (-) True XLOC_016717

Expression Profile

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