RNA id: XM_021611389.2


Basic Information

Item Value
RNA id XM_021611389.2
length 4582
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110529272
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 4591470 ~ 4618613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatctatctatctgaccAAACTGTCAGCAGCCCTCCCTGACAGCTGCGGCGCTGTGGAGAAATCCGAGGTGTAAGAGGGAGCTCTTCAGCGGAGCTGCAGCTGTCGCTCGTGTTTTATTCGGCTTGTAGCCATGGCTCGGTTCGCTGCCTTACTGCTTTTACCTGTTCTCATTGAATCGGTATtttctatttctttctttctacctGTAAATTCAAGAAAATGTCTACGGGAAGAGATTCACAAAGACGTGCTCGTCACGGGAGAGTATGATATCAATGACGAGTCCAACACCAAAACCAACCTGAAGATCACAGACTCATCGGGACACATCCTCTACTTGAAGGAAGATGCAACGAAAGGGAAGTTTGCCTTCACAACAGAAGATTATGACATGTTTGAAGTGTGCTTTGAGAGCAAGTCACCAATGGGATCTGGGAGAGTCCCCGACCAGCTGGTTAATCTGGACATGAAGCACGGTGTAGAGGCCAAGAACTACGAGGAGATCGCCAAGGTGGAGAAGCTGAAGCCCCTGGAGGTGGAGCTAAGGCGGCTGGAGGACCTATCGGAGTCCATCGTCAACGACTTTGCCTACATGAAGAggcgagaggaggagatgagggataCCAACGAGTCCACCAACACACGTGTCCTGTACTTCAGCATCTTCTCTATGTGCTGTCTGATCGGCTTGGCCACCTGGCAGGTCTTCTACCTGCGACGTTTCTTCAAGGCAAAGAAGCTCATCGAGTAGAGAGGCATCACCACTCCGCCAGGGGAGAGCAGCCAAATGCTTACCCGATCAATCTCCACCATCTTCGGACTAACGTCGTCAAAACTAGCGCTGTGACTGGAGGAGATGGAGACCCGCGTACTGTCGAGAGACAAAAAAGAAGGAATAAATCCAAAAACCTGAGGCAAAACGGGAATAATTGTAGTCCTTTATTGGACAGTGTGCCAGTCTCGATCTCTTCCAGTGTTCTTATTTTGACCCTTACACACCTGGAACCACCACTATTCAGTAGTAAGGACAGCCTCCTAGATAtttgtgtgtttttaaatgcCACCATATTTCCTCGAGTGctctacattttttattttttgctaaCCAGAGGGCTCCTCGTTTCTCCCCCCCCATAGGGCTCCTCGTTTCTCCCCCCCCATAGGGCTCCTCGTTTCTCCCCCCCATAGGGCTCCTGGTTTCCCCCCCATAGGGCTCCTGGTTTTCCCCCCCATAGGGCTCCTGGTTTTCCCCCCCATAGGGCTCCTGGTTTTCCCCCCCATAGGGCTCCTGGTTTTCCCCCCCATAGGGCTCCTGGTTTTCCCCCCCATAGGGCTCCTGGTTTCCCCCCCCATAGGGCTCCTGGTTTTCCCCCCCATAGGGCTCCTGGTTTCCCCCCCCCATAGGGCACCTGGTTTCCCCCCCATAGGGCACCTGGTTTCCCCCCCCATAGGGCTCCTGgcaaatgtagtgcactgtatagggagtaAGATGGTGTTTTGGACATCAAAAAGAATGAGCAGGGGAAGGATTCAGGGGTGTGGTGCTGAGAGAGCACCGAGGGTAGCTTATTCTCTGAAAGCCATGTACACCTGGGACTCATTCAGTggagtgaaacattaaaaaaaaaaaaacaatgtagaATATACACAGATTTTTAAGTCCAGGAGTGAATCGTGCATGTCTGTTCAATCTGCAATTTGTTCTGAAATGTATTATCATCCTGCTGAAAAAGCACCTGATGCtttgttgatttgatttgacatttttaACGTGTTTAGTTTGATCTGGAGTTTAATTTTGTTGGGATGAACGGATGCACCCTCGAGAAAGGTCTattcccccctttttttttttacatcgttGTATAAAATCTTTGCCATGCCAAGCGACCTGTAGGATATAGGGTTCAGcccaaaatggcaacctattccctataagAATAGGGCACCGTTTGGGCAAAGACgatattcttggggacctttttttttaaaaatatgttttaaactgaaggcctCTATGAACGACAGGTGGAATGTGTTGTCACTCAGAATAGAAACCATGGCGACCACTGAACTTTTTATGCTTTTGCCAGCTAATTAATTTGCATACATGTTTGGTAGCTAAATTTGACTGTCTTTAGTTTGTTTTGATTGTAAATGCAGGGCAGGTATTGGGGGGTGGGGGTTAATAAGTTCAGGGAAAGAGTAGCTATATCTCaaacggaaccctattccctatataggcctagtgcactacttttgaccagtagtactgtactatatagggtgccatttgaaccctattccctatataggcctagtgcactacttttgaccagtagtactgcactatatagggaatagggtgccatttgaaccctattccctatataggcctagtgcactacttttgaccagtagtactgcactatatagggtggcATTTGAGATGCAGCCAATATAATCTTGAAAACTAGGTCATTTTATAGCGGAACCATGGCACGCTTTTAAGTTGTTTTTTAAGAGATGTACAAAATATAAAAGCCGCATATCTATGTACTTTTCCATCTGAATAGGTTATAAGACGAGTAGAGCTGCAGGGCCTTTTGGGAAATGATGTCTCTTCTTCTTTTGAGACCCATTGAATCTACACCAACCATCCCAGATCCATCCAGCTTTCTTTTGGAGATAATTCTGGGGTTTGGGCTACGTGAGGATTTGGGGttggtttaaaatgttttttttttttttgctgttttaaaaaaaaaatctctggtGCAATTTTCACATGTATGTGGTATATTTCCACAACTCTTAATACAAAATTGAAAACAGATCTTCAAAAATCCAGTTTCAAAACTAAGCATATTTTCAATTGACTAAGTACAACAGTCACTTTATTTTTACACCAAATTTAAtcagtgtttcatctagaaatGCATGTTTCACATTGCAATACATGTTCATATAAAGTCATTGCTTTTCTCAATGCTCCCATTACTTTAGGTATGATTCTCTTCTCTTTTAAGACGTTTTACAATTACATAATCCAACTGCTCTTTATCAGTGATCACTTAAACCCATGGAACGTTTGATTAAACCCACGGAACGTTTGATTAAACCCACGGAACGTTTGATTAAACCCACGGAACGTTTGATTAAACCCACGGAACGTTTGATTAAACCCACGGAACGTTTGATTAAACCCACGGAACGTTTGATTAAACCCACGGAACGTTTGATTAAACCCACGGAACGTTTGGTAAATGGATCGATTTTACATTTTGTCTACTACAGATTTTGAGAACTAAATAATGACAATGGATGTCTGTAGAAACGTAAGTATGATCTATGTATTACTATTATGATTTTACTTCACAGTAAGTCAAACAAGTAAAACAAATCTGATATTGACAAAATCAGACATGTACTATATGTTACAAATTAAAacgtttattggtcgcgtacacagattAGCGGATGTTACAGCAGgcgcagcgaaatgcttgtgtttctagcgccTGCATTGCAGTAATACAATACCAATACGCAAATAATCCAGAAAGTCCTTAAcaataaataaatgcttcactaaAATAGCATTGGGTAGTACGGTTCTGTAAAATAGTCCATTTACatagacacttttatccaaagtgacaacAGTCCACTTTTTGGTATGTGATCCCAGTAGGAATGGAACCCACACCTCTGGTGTTGCTAGTGCCACGCTCTTATGAACTGTGAGACACGTACAGAACCACTACAATACATTAGGTACAACACAGGTGGAAGATCTATGATTGCCACCCCCATGAGCGAACCACCACCCTCTAGTCTAGGCCATGGATGACTCATGCAATGACGTCAATCCAGACCTATATCAGGCCAGGTGCATGATATTTACTGTGATTTCGATGAGAACCTACGGCCAAACGCTCCAGACAGGTTTGATGCAATTAGCGCCTTAAACGTTTCTTTCATTTGATTACCTTATGAAAGTTGTCTTCGATGATCAGACATGGGATAGAAGTTATTGACATTTCAAGTTCAGTTCATTTTAATGGGTAGTGCAAGTGTATTGCCGAATGTGAAACAGTGTCATGTACTGTAATTTACACTACTGGAGCATACTACATTCAAAGAGCAAATTGAAACATATCTTAAAAAGTGTTTTTGTGCTTTTGGATTAATTGGTTAAAATAACTAAATTAAGGAGATGTCATTAGgttgtgttttggtgattaaaccAATGTTCTTATTTCACAGTAAACTTTATATTTTGGATTAATGGTTGTGTAGTGAACGATGTCTACAAACCAAATAAAGTAATATTGAAAGGATTTGAATGTAAGACTGGCTGCATTACAAGTGTTaccagtttggagttttgtactaagagaTTAGAAAATTCACATATTTGTGAAAATGGCACCAAAtcgtaaaaaaacaaacagaaaaccatGTGGGATACATAAATTTTTAACAGTGAACATTTGCAATGTTTTCTATATTGATTGATATCAATTTGTAAAGGTCTGTGTTTGGGCTTTTATTCAATAAAATATTGGATGGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU759759 lncRNA downstream 56147 4527955 ~ 4535323 (-) False G667146
TU759760 lncRNA downstream 56147 4527955 ~ 4535323 (-) False G667146
TU759761 lncRNA downstream 56147 4527955 ~ 4535323 (-) False G667146
TU759762 lncRNA downstream 56217 4527955 ~ 4535253 (-) False G667146
TU759763 lncRNA downstream 56217 4533902 ~ 4535253 (-) True G667146
TU759849 lncRNA upstream 52069 4657926 ~ 4658238 (-) True G667202
TU759856 lncRNA upstream 59227 4665084 ~ 4665444 (-) True G667207
TU759875 lncRNA upstream 81408 4687265 ~ 4704845 (-) True G667221
TU759904 lncRNA upstream 114377 4720234 ~ 4757404 (-) True G667240
TU759909 lncRNA upstream 116421 4722278 ~ 4746835 (-) False G667242
XM_021611388.2 mRNA downstream 974 4582725 ~ 4590496 (-) True LOC110529271
XM_036984593.1 mRNA downstream 977 4582547 ~ 4590493 (-) False LOC110529271
XM_036984594.1 mRNA downstream 1803 4582547 ~ 4589667 (-) False LOC110529271
XM_036984587.1 mRNA downstream 233314 4280005 ~ 4358156 (-) False LOC110529162
XM_036984589.1 mRNA downstream 233314 4286599 ~ 4358156 (-) False LOC110529162
XM_021611391.2 mRNA upstream 13120 4618977 ~ 4621813 (-) False LOC110529274
XM_021611392.2 mRNA upstream 13120 4618977 ~ 4621813 (-) True LOC110529274
LOC118965591 mRNA upstream 166289 4772146 ~ 4832142 (-) True LOC118965591
XM_036984604.1 mRNA upstream 239489 4845346 ~ 4881446 (-) True LOC110529294
XM_036984607.1 mRNA upstream 581502 5187359 ~ 5204422 (-) True LOC110529164
TU759716 other downstream 101250 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 921323 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 1069847 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 1173182 3417113 ~ 3418288 (-) True G665718
TU757859 other downstream 1250510 3340056 ~ 3340960 (-) True G665655
TU760267 other upstream 942946 5548803 ~ 5551245 (-) True znf395b
TU761008 other upstream 1600701 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 1674339 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 2180675 6786532 ~ 6794187 (-) True wdr21
TU762099 other upstream 2383993 6989850 ~ 6991612 (-) False G669087

Expression Profile