RNA id: TU763897


Basic Information

Item Value
RNA id TU763897
length 1091
lncRNA type sense_over
GC content 0.51
exon number 2
gene id LOC110529319
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 8685360 ~ 8731870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCCCCCAAGTCCCACTAATGTCTCTCTCAGCGTGGACGCAACGTCACGTCCGTACTTGAACTTGAATTCTTATCCCATTGTACAGAGGCAACCCCAGCCATACACACACGAAGGGGTCCTCCCAAAGCAACAAGACGGAAACACTGGACCTCCACTGtttggaatgagagaaagaggaggtgttTGGCTGTGACTGGCTgttgtctccgtctccccctcaACTCCTAGAGCGTAGAGTTCCATGCCATTCCGTTCACCGTTGCCAAGACGCGCGCCGCGAGGACTGAATGGGGCCAAAGCTCACATCACGTAAATGAGTAGCTAATTTGTTATAATTATTTAAGAACATatcagaggagaagaagaggtgaCAGTTGAATCGAATATTGACCCATCGGTCGAAGAGTGGCATGCACCGTAGGCTACCCCAGTTGTCAACGCGCTGCAGAAGAGGGCACCTCGTCGGAATTTAAATGATCGTTATTCTCTGCAATCATTACAATATCCATTGCTGTATTAACAAAACATAACCTTCCAGAAATATTTGCATGCACCTGCATGTTTCTGTTGTGTCCTAAAGCTTCCTTTGGCAATTCCAGGTGTTGCGTTTAGGGTGAGTGATTCTGCGATAAGAGAACTAACTGGACAATTGACCAACGGTTTTTACCCGCCTTTCAACAACCACAATAAAAACACACTAGGCTCATTTTCACTTGCAGTAGCTTTGTGAAAATCGTCTGAATTGGAAGCAATTTGAAAAAAAGTTACCGGGCACCAGACCAGCGGAGGATCATCACGGAGCAAGCCAACCCCAAGCGCAGGTCTCCGGGCGATGCCAGAGTAGATGCAGGGGCAATGTCCCGTCGCAAGCAGGGGAACCCTCAGCACCTACCACTGTCGCAAAGAGAAACAATACGACCCGAGGCCAATCATGAGTTGGGGGTGGGAACTCGCTCCCCGGAGCCGTCCACTCCCAGCCCCACTCCGAGGAGGGCGGGACCAGGGGAGCATGACCTCTTGACCTGTGGGAGGTGCCAGACCAAATTCCCTCTGGGAGACATCCTGGTCTTCATAGAGCATAAGAGACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU763909 lncRNA downstream 69067 8640267 ~ 8641751 (-) True G670582
TU763477 lncRNA downstream 202724 8507894 ~ 8508094 (-) True G670210
TU763464 lncRNA downstream 221813 8488763 ~ 8489005 (-) True G670197
TU763457 lncRNA downstream 227472 8483056 ~ 8483346 (-) True G670190
TU763454 lncRNA downstream 230232 8480366 ~ 8480586 (-) True G670187
TU763958 lncRNA upstream 14269 8746115 ~ 8747161 (-) True G670628
TU763967 lncRNA upstream 24435 8756281 ~ 8757422 (-) True G670635
TU763970 lncRNA upstream 31399 8763245 ~ 8763829 (-) True G670638
TU763971 lncRNA upstream 32192 8764038 ~ 8764260 (-) True G670639
TU763979 lncRNA upstream 51396 8783242 ~ 8783849 (-) True G670647
LOC118965604 mRNA downstream 143098 8565390 ~ 8567720 (-) True LOC118965604
XM_036984667.1 mRNA downstream 334558 8363464 ~ 8376260 (-) True LOC110529317
XM_021611436.2 mRNA downstream 353137 8344022 ~ 8357681 (-) True LOC110529314
XM_021611437.2 mRNA downstream 353229 8344022 ~ 8357589 (-) False LOC110529314
XM_036984666.1 mRNA downstream 353711 8344022 ~ 8357107 (-) False LOC110529314
XM_021611457.2 mRNA upstream 26235 8758081 ~ 8862989 (-) False LOC110529325
XR_005052769.1 mRNA upstream 26235 8758081 ~ 8862989 (-) False LOC110529325
XR_005052770.1 mRNA upstream 26235 8758081 ~ 8862989 (-) False LOC110529325
XM_021611458.2 mRNA upstream 26235 8758081 ~ 8862990 (-) True LOC110529325
XM_036984675.1 mRNA upstream 132353 8864199 ~ 8879928 (-) False LOC118965490
TU763857 other downstream 133038 8577051 ~ 8577780 (-) True G670549
TU763341 other downstream 368698 8340990 ~ 8342120 (-) True G670097
TU763125 other downstream 599860 8107871 ~ 8110958 (-) True G669918
TU762377 other downstream 1292583 7416025 ~ 7418235 (-) True G669281
TU762376 other downstream 1296582 7401464 ~ 7414236 (-) True LOC110529302
TU764088 other upstream 224247 8956093 ~ 8961731 (-) True G670733
TU764280 other upstream 532004 9263850 ~ 9265093 (-) True G670905
TU764524 other upstream 614538 9346384 ~ 9347879 (-) True G671122
TU765218 other upstream 1239836 9971682 ~ 9972812 (-) False kif26aa
TU765219 other upstream 1239836 9971682 ~ 9972812 (-) False kif26aa

Expression Profile