RNA id: TU763967



Basic Information


Item Value
RNA id TU763967
length 1116
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G670635
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 8756281 ~ 8757422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACGAGacataaaagtgtgtgtgtgtgtatagaaagCACAAAATAGTTTGTTAAAGTAAAGCCTAATTAAGGCACTATTGATATAAGCATTCTAAAAAGATCCCATCGCTCAGATTTCACATAGTAAAGTTGATCATTATGTACAAATACACCCCTGGCTGTCCAGTGCTCTATCGCCCTGCCGTTCAGATATGGGTTACCAACGTCTCTCAGTTCATGACTCCTACAAGTAACAGTTTAAGTGCAATTACTGTAATTATACAGGGTACATCCAGTCCAATACATTTGACAGATTAACCAATAATCACACAGCTAAATTAAAATAATAAGGAGGAAAAAATAAGTTTGGTATTTTCCGCGATAAACCCAACTTGGTTTTCCACACACAAGGTAAAGTTATCACAATATTGATTactgaaaatatGTAAGCAAAAACAAGCAGCCTTTTTGTAGCATTAACCGGACCATCAGTCTAAATATCAATTGTATTTCCTTTCAATTCATCTCAAAATGTGTTCAACCATGTTAAGGATTCAATATCATCTGCCTCGTGTACTCTCAAAAGGAACCCTTTGGAATGTGGAACTGATAGAATCTCTACAGAATGCCTGTTCAGATTCCAGGGATCATAAAGATGTACATGTATGGGATTCCACAACGCCTCTAAGATCATGTACATTAAACAGATCGCTCCTTTATTTGTTAAGATCTCCAGTGGACTCCAGAGTCGTACTCATTAGGACACAATGTACCAaactgttttgcaacagaaagcCGAAAAGGagtatttcttattggacaagttcagataaCCAAACTGAGGGactttcttctgtttggtgcctaatgaacacgacccaggacTGACAACAGGAACAGGACTGCTAAGCATCAGACATTCCTCTACTTTTCTTCCACatttctcttcctctcatctcatcCATCCCCCATGATTCATGGGCATGCCAGGGGGTGGCAGGGGCACCTGAGGCTGGCCTGGTGGCAGGGGGTACACCCCAGGAGGCATACCCATCCCTGGAGGGGGCATgcgtggagggggaggggggtactcAGGGTAGCTGTGGTTGTAGCCCGGTGGAGGGTatgctggggaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU763958 lncRNA downstream 9120 8746115 ~ 8747161 (-) True G670628
TU763897 lncRNA downstream 24435 8710818 ~ 8731846 (-) True LOC110529319
TU763909 lncRNA downstream 114530 8640267 ~ 8641751 (-) True G670582
TU763477 lncRNA downstream 248187 8507894 ~ 8508094 (-) True G670210
TU763464 lncRNA downstream 267276 8488763 ~ 8489005 (-) True G670197
TU763970 lncRNA upstream 5823 8763245 ~ 8763829 (-) True G670638
TU763971 lncRNA upstream 6616 8764038 ~ 8764260 (-) True G670639
TU763979 lncRNA upstream 25820 8783242 ~ 8783849 (-) True G670647
TU764006 lncRNA upstream 66031 8823453 ~ 8823833 (-) True G670673
TU764033 lncRNA upstream 106778 8864200 ~ 8864540 (-) False LOC118965490
XM_036984671.1 mRNA downstream 24411 8685360 ~ 8731870 (-) False LOC110529319
XM_036984672.1 mRNA downstream 45003 8685360 ~ 8711278 (-) False LOC110529319
LOC118965604 mRNA downstream 188561 8565390 ~ 8567720 (-) True LOC118965604
XM_036984667.1 mRNA downstream 380021 8363464 ~ 8376260 (-) True LOC110529317
XM_021611436.2 mRNA downstream 398600 8344022 ~ 8357681 (-) True LOC110529314
XM_021611457.2 mRNA upstream 659 8758081 ~ 8862989 (-) False LOC110529325
XR_005052769.1 mRNA upstream 659 8758081 ~ 8862989 (-) False LOC110529325
XR_005052770.1 mRNA upstream 659 8758081 ~ 8862989 (-) False LOC110529325
XM_021611458.2 mRNA upstream 659 8758081 ~ 8862990 (-) True LOC110529325
XM_036984675.1 mRNA upstream 106777 8864199 ~ 8879928 (-) False LOC118965490
TU763857 other downstream 178501 8577051 ~ 8577780 (-) True G670549
TU763341 other downstream 414161 8340990 ~ 8342120 (-) True G670097
TU763125 other downstream 645323 8107871 ~ 8110958 (-) True G669918
TU762377 other downstream 1338046 7416025 ~ 7418235 (-) True G669281
TU762376 other downstream 1342045 7401464 ~ 7414236 (-) True LOC110529302
TU764088 other upstream 198671 8956093 ~ 8961731 (-) True G670733
TU764280 other upstream 506428 9263850 ~ 9265093 (-) True G670905
TU764524 other upstream 588962 9346384 ~ 9347879 (-) True G671122
TU765218 other upstream 1214260 9971682 ~ 9972812 (-) False kif26aa
TU765219 other upstream 1214260 9971682 ~ 9972812 (-) False kif26aa

Expression Profile