RNA id: TCONS_00036428


Basic Information

Item Value
RNA id TCONS_00036428
length 590
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id XLOC_017709
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 50451469 ~ 50504264 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGGCCTGCCTGTTTGACCTCTGTGCGTCTGATCTCCACTAAAACCAGTGTTTTTCCTCACAGTGTTGAAGGTCACACGCTGACAAAGCACCACAGATCTGACTCTGACAGCTCCAGATGTCCTGCAGTGATTCACGGCTGCTGAACGCCAGGCCGGACACTGTTAATGCCACCGGGATTATCGCAGCCGTCCCGGCGAACCAGACTCGCAGATGCCGTAAATCTCCTGTCACGACGTCCACTTCCATTAGCCGTTTTTCATCGCTCACTTAAGACGGTGTCGAGGGAGTGTTTCTTCGCCATAACCTGAAGTGCTGAGAAAGAGGGGAAAACTTCAAGCTGAAGTGAACATCACAAGCTCTGCGAGTCTCCAGCCTGCGGTGGATGAAAACCCCGAGTGGAAAGGAGAAGACGCTGCACATTCACAAGGATAACACAAAATCCTTCGAGATGAACCAAGAGCGTGTGTTGGATCTGTCTGAACGCTACTGTACAAGATCAAACCCAACAGAAAGCAGCAGAAAACCCCCTCGTCCTGTCAGTCTTCAATCCACAGCAGATTCCCAAAGCTTTCTGGAGGATTTCTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036736 lncRNA upstream 118925 50329228 ~ 50332544 (+) False XLOC_017708
TCONS_00036737 lncRNA upstream 118925 50329342 ~ 50332544 (+) False XLOC_017708
TCONS_00036738 lncRNA upstream 118925 50329814 ~ 50332544 (+) False XLOC_017708
TCONS_00036740 lncRNA upstream 118925 50329977 ~ 50332544 (+) False XLOC_017708
TCONS_00036739 lncRNA upstream 118925 50329977 ~ 50332544 (+) False XLOC_017708
TCONS_00036744 lncRNA downstream 515467 51019301 ~ 51081372 (+) True XLOC_017712
TCONS_00035057 lncRNA downstream 559040 51062874 ~ 51156101 (+) True XLOC_017714
TCONS_00035059 lncRNA downstream 665078 51168912 ~ 51172061 (+) False XLOC_017716
TCONS_00035060 lncRNA downstream 665078 51168912 ~ 51173504 (+) False XLOC_017716
TCONS_00035061 lncRNA downstream 666706 51170540 ~ 51172061 (+) True XLOC_017716
TCONS_00035048 mRNA upstream 253262 50115335 ~ 50198207 (+) False XLOC_017705
TCONS_00035049 mRNA upstream 253262 50184934 ~ 50198207 (+) True XLOC_017705
TCONS_00035046 mRNA upstream 361571 50052627 ~ 50089898 (+) False XLOC_017704
TCONS_00035047 mRNA upstream 365374 50061890 ~ 50086095 (+) True XLOC_017704
TCONS_00035045 mRNA upstream 365376 50052116 ~ 50086093 (+) False XLOC_017704
TCONS_00035051 mRNA downstream 146309 50650143 ~ 50740404 (+) True XLOC_017710
TCONS_00035053 mRNA downstream 348522 50852356 ~ 50998251 (+) False XLOC_017711
TCONS_00035052 mRNA downstream 348522 50852356 ~ 50998251 (+) False XLOC_017711
TCONS_00035054 mRNA downstream 452535 50956369 ~ 50999404 (+) True XLOC_017711
TCONS_00035055 mRNA downstream 502528 51006362 ~ 51081372 (+) False XLOC_017712
TCONS_00035033 other upstream 1418351 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 1838033 48613321 ~ 48613436 (+) True XLOC_017687
TCONS_00035022 other upstream 1839099 48612257 ~ 48612370 (+) True XLOC_017686
TCONS_00035021 other upstream 1840159 48611195 ~ 48611310 (+) True XLOC_017685
TCONS_00035020 other upstream 1841002 48610352 ~ 48610467 (+) True XLOC_017684
TCONS_00035066 other downstream 708098 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035075 other downstream 1012368 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035099 other downstream 2416022 52919856 ~ 52919986 (+) True XLOC_017742

Expression Profile

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