Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035053 |
| length | 2211 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 22 |
| gene id | XLOC_017711 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 50852356 ~ 50999404 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032324 | molybdopterin cofactor biosynthetic process | biological_process |
| GO:0007529 | establishment of synaptic specificity at neuromuscular junction | biological_process |
| GO:0097112 | gamma-aminobutyric acid receptor clustering | biological_process |
| GO:0098970 | postsynaptic neurotransmitter receptor diffusion trapping | biological_process |
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | biological_process |
| GO:0018315 | molybdenum incorporation into molybdenum-molybdopterin complex | biological_process |
| GO:0072579 | glycine receptor clustering | biological_process |
| GO:0030425 | dendrite | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0099572 | postsynaptic specialization | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061598 | molybdopterin adenylyltransferase activity | molecular_function |
| GO:0061599 | molybdopterin molybdotransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070705-4 | Predicted to enable molybdopterin molybdotransferase activity. Acts upstream of or within glycine receptor clustering. Predicted to be active in several cellular components, including dendrite; postsynaptic membrane; and postsynaptic specialization. Is expressed in head; rhombomere; spinal cord; and spinal cord interneuron. Human ortholog(s) of this gene implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C. Orthologous to human GPHN (gephyrin). |
| ensembl_id | ENSDART00000168396 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036429 | lncRNA | upstream | 348092 | 50473368 ~ 50504264 (+) | True | XLOC_017709 |
| TCONS_00036428 | lncRNA | upstream | 348522 | 50451469 ~ 50503834 (+) | False | XLOC_017709 |
| TCONS_00036741 | lncRNA | upstream | 519812 | 50329990 ~ 50332544 (+) | False | XLOC_017708 |
| TCONS_00036744 | lncRNA | downstream | 21050 | 51019301 ~ 51081372 (+) | True | XLOC_017712 |
| TCONS_00035057 | lncRNA | downstream | 64623 | 51062874 ~ 51156101 (+) | True | XLOC_017714 |
| TCONS_00035059 | lncRNA | downstream | 170661 | 51168912 ~ 51172061 (+) | False | XLOC_017716 |
| TCONS_00035060 | lncRNA | downstream | 170661 | 51168912 ~ 51173504 (+) | False | XLOC_017716 |
| TCONS_00035061 | lncRNA | downstream | 172289 | 51170540 ~ 51172061 (+) | True | XLOC_017716 |
| TCONS_00035051 | mRNA | upstream | 111952 | 50650143 ~ 50740404 (+) | True | XLOC_017710 |
| TCONS_00035048 | mRNA | upstream | 654149 | 50115335 ~ 50198207 (+) | False | XLOC_017705 |
| TCONS_00035049 | mRNA | upstream | 654149 | 50184934 ~ 50198207 (+) | True | XLOC_017705 |
| TCONS_00035046 | mRNA | upstream | 762458 | 50052627 ~ 50089898 (+) | False | XLOC_017704 |
| TCONS_00035047 | mRNA | upstream | 766261 | 50061890 ~ 50086095 (+) | True | XLOC_017704 |
| TCONS_00035055 | mRNA | downstream | 8111 | 51006362 ~ 51081372 (+) | False | XLOC_017712 |
| TCONS_00035056 | mRNA | downstream | 63444 | 51061695 ~ 51077936 (+) | True | XLOC_017713 |
| TCONS_00035058 | mRNA | downstream | 106116 | 51104367 ~ 51123265 (+) | True | XLOC_017715 |
| TCONS_00035062 | mRNA | downstream | 199507 | 51197758 ~ 51211840 (+) | False | XLOC_017717 |
| TCONS_00035063 | mRNA | downstream | 201415 | 51199666 ~ 51213829 (+) | False | XLOC_017717 |
| TCONS_00035033 | other | upstream | 1819238 | 49033004 ~ 49033118 (+) | True | XLOC_017695 |
| TCONS_00035023 | other | upstream | 2238920 | 48613321 ~ 48613436 (+) | True | XLOC_017687 |
| TCONS_00035022 | other | upstream | 2239986 | 48612257 ~ 48612370 (+) | True | XLOC_017686 |
| TCONS_00035021 | other | upstream | 2241046 | 48611195 ~ 48611310 (+) | True | XLOC_017685 |
| TCONS_00035020 | other | upstream | 2241889 | 48610352 ~ 48610467 (+) | True | XLOC_017684 |
| TCONS_00035066 | other | downstream | 213681 | 51211932 ~ 51212048 (+) | True | XLOC_017717 |
| TCONS_00035075 | other | downstream | 517951 | 51516202 ~ 51516318 (+) | True | XLOC_017723 |
| TCONS_00035099 | other | downstream | 1921605 | 52919856 ~ 52919986 (+) | True | XLOC_017742 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00000295 | True | 447 | mRNA | 0.57 | 4 | CM030141.1 | 10278809 ~ 10293472 (-) |
