RNA id: TCONS_00035056


Basic Information

Item Value
RNA id TCONS_00035056
length 5446
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_017713
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 51061695 ~ 51077936 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGTCTGCGCacatgtgctgctgctgctgcgccTGAGCCCGGTCTGAGGAGGGTCGCCTTCTCCGCCTTTTTGTCTGCAAGAAATGGCATCGGCGGAGGATGTCGGAGCGAAAAGGCAAATGTTTTATGAAATCGAGTGTGTAATAGACGACTGCGATGCTGATGTTGAATATAAACCCCTGTCAGACAGCGACGAGTTCGACGAGGAGGAGGAACCGCGCGAAGAAGATATTGATTCTTCTGAAGAATGGGAGCCTCTCATGCAGtcaaaactaaagaaaaatgcATCCCCGTCATCATCATCTTTACCACGACGAAGAGGACGACCACGTAAAAACGTTTCTAATCCACCGCCAGCAGCACCAGCACCAGCAGTGAAACCAGTGATTTTGCCTAGAATCGCACCAGCTCCCCCTGGCATGAAGAGTAGGCGAGGCAGACCTCCTAAAGACAAATCCAAAGTCAAACTCCTTCAAAAACCCACCCTGTATCCCATGATCGTGCCCAAACCTCCTGTGTTTGCAACTTTGATCCCTAATACTTCAGCGCAGAACCTTAAACTTGGGCCTAATTCCACATCCACCATTACACTCGGCCCTGATTTCAGTCCTTTAACTCTTTCCAGTCCCGCATCCTCCGTTAATTTGAATCCCAATTCTGCACCCATACTCATCCCGAATTCCACATCTGCTTTTAATCTCAGCCTGAATTCTGCTACATCCGATTCGAATTCGCAATCGCTTGCCACGCTCTTCTGTACAACTACATCGACGAAGATTCTGGTAGACGGAGACTCCAGAGAGAGCAAAGCCGAAGAGCAGACGAGTGTGAATGCAACTGATGAAGAAAGCCCTGCTCCAAAGGACGAAAACCCAGAATTCTCAGAATCTCCCAATGCAAAGAGGCAACGACTCTCAATAGCATTTCTTCCATTGGCCAATGCACAGCAGACAGGCGCACCCTTAAATCACATTTCACAACCTGCTTCTGATCATGCACCTGCTTCTGAATCTTCCCCCGAGCTCAGTTTTCAACCTTCTCCAACAACCATGGATGATCAGTTGACCTCAATATTTGGCTCTGATCACAAGCCTGAGGCCGACAGTGACCTTGATGGAGACACTGACAGGACCAGTGATTCAGAGAAGGAGGACGAGCTGTGGGAAGATGAGTGAGTAagggagtttttttttgtttctgactAGCGTTTACATGACCTCCTGATGTCCCAAACCgagattagattttttaaaagttgaacTTGTTTCAACTTCTGACTTTTTGAAGGCTGGGTCATGCGAAATGCTGCAGAAAGACTGTGACAAACATCCCTAATGTGCaagtttttcttaaaaaaacatcATGGAAAAGGACCACAATAAAATGTAGAGACATATTGTGTGTGATGGGCCCCTTATCTGTTTTTAATGCAATGTAACATTCTATACAATGGAAATATTGTTtcacagttatttaaaatgacaatcgAAATCTTAAATCGTACTCAAGATTGGATGGTTCAtgaaataatgacatttttaaccTTACAAAGCTTTCTGTCATCACATTTGATATGCAACTTTAATAATGTCTAAATTACCACAAAACCTTTGCTTTAAAAAGCTGTTGTAAACGATCGACGGTATGCTGGcgcaaataaaatgcattttaacataactgtagaaatatatattttaagaatgTGGTTCAATGATTGatcattttaaactttaattatcctttttttgtgtgtgtttcaaatATGGTACAAAAGGCTTGAGAAAGAATTGTGTTCAACATTGtgttgtattgtttgttttgccCCTACAGTACAAACATAAGAGATTTGGTCATGAACTATAAGTTCTTCTTACTTTTTGACCATTTTAAATAAGAGTATTTGGACCAGATGAAATCTTTTTGCTCAGTTAAGGCATctgaataaaatgtaatatttttttcttctcaaaTGTGGAAAGTTTTATGTTGTCATTATATCCTTTTATTTAAGGGGATTCAAAGTCGAAGATTTTGTGGAGTCACTTAACAGCATTCTTAAGGGTGCCTCTCACCCCATTATATAGACATaagtatataataaaatatatacgtAGATTCTTAAATAAAGCTATGAAATTTAGAAAATTCAAGTGTAGTGAATGTTTTTTGTTGTCTTATATGAGGCTATGATGAGATCTTATGCAcaacaaactgttttttttttttttctttaatgatgCTATACGACATTGTGTTTTAGTAAAAACTCTTGATTTTTGACCCATGAACAGCAACCATTGTACCAGAATTATCCACAAACGAAAGGTTGGCTTACAGTTTGTTTTATGTGTGTTCTGTTACAGTTTTGATTTTGGTGAAGATCGGAACTGGAAAGTCCAGACCATTTAAAATCACCTGTATCAGCTCAGTCACCTAGGGGTGGCAATCATCCGTCACCTACTTCATCACAAGGCAAACTCTTCATATCCACCTCCAAATCACCTCATGAAGTCACTCCCACACCCACCTTTAAAGCCAGTACCATTCAACCTATATCTAAAGCTACTCCCGCTTCTGAAACTACCCCTAAAATTACTCTAAAGCCACTACTATTCAACCTACCTCTCGAGCTACTTCGATTTTCGAACTCACCCCAAAATCCACTCCCACTCACCTCACTCCTGACGCCACTCTGTCATCCATAATTCCTCTCCTCAAACAACACTCTTACCCAGTCCAGTTGCTACCTTACAAAAAAGGAGAGGTCGGCCCCATAAGAGTTCTTTACCATCAAATCCTAAACCAATTCCTTAACCTACCCCTACTACCATTCCTTTTTCAAAGCTGACTCCCAATCCCACTTTCTTCAGCAAATTAGAACTCTGTTCAGAACCAGCACCCAGCTCTAGAGACATCCCTCAGCCCACTTCTAACTCTGAAGCTACACCAACTCAACCCACCCCTGAATGCACACGCTCTACCATCCAAAATTTCACTTCTAAAGCCACACTCATACTTAGTCCAGTACCCACCTTACAAAGACGGAGACATCGGCCCCATAAGAGTTATTTACCATCCAATCCTAAATCAATCACTTAGCCCACTCCCACCACCATTTCTTGTTCAAAGCTGACTGCTGATATTAGCCCCATAGCCATCTCAATTTTTTACTTTGATCCCACTGTAAAGTCATATTTGAAGCTGCTCCTAATCCCAGTTTCTTCACCAAATTAGAACCTGGGTCAGAACCAACATCCAGCCCTGGAGCCATCCCTCAGCCCACTTCTAATTCTGAAGCTACTTTCATTCAGCCCACCTCTGAATCCACTCTCATATCTACCACTGAAACCACACCCAATCAACCCACCCATGAAGCCTCTCCCTCTATTGTCCATTACTCCACTCCACAAACCAAAATCATACCCAGTCCAGATTTCACCCTACCAAGACAGAGAGGTCGACCCTGTTGGAGTTCTTTACCATTCAAACCTAACCAGTCCCTAAACTCACTCCTATCGCAATTCCTTGTTCAAAGATAACTGCTGATTTTAGCCCCATAGTCATCTCCAATTTCCCTTCCGATCTCACCCTAAATCGTATTTAATGCCTGCTCCCAATCCTACATTGTTAACCAAATTAGAACCTGAGTCAGAACCAACATCCAGGTCTGGAGTCACTCCTCAGCCCACTTCTGCAGAAGAGAAATCAAAGCCCATCACAACTTATTCTTTAAGGCATACCAGAACCAAGGAATCTTTTCACCTTGGTCAGAAGTTGGGGGCAAACCAGATAAATGGCTTGACTTGAGTACTAAAGATGGGAAACCAGTACTTCACAGGATCTCTCCCAAATGAACTCCAGGTCCATAGTTTTTGAATGACCTAATTTATACTGCCTTAAAGTTTTCCACCACCTCTGCCATCAAGACATTTATCCGCAACACCAATAGCAATGCTGAAAGGAGGACAAAAGTAAGAATGTTTCGCTGAGTACCTCTAACCATTGCTAAATTCAACTCCTATGTGGCGCTGGTTGTCTACATGGGTCTAGTGAAAACTAAGTCCATCGTGGACTACTGGACAAAAAAGCCAATGTACAGTTTCTCCTACCCTCAATCCATCATGTCCCAGGCATGGTTTCAGGCGATCTCCTGAAATCTGAACCTCTGTGATCTTGACGAAGATAAGGAGAATGGCTAGACGAAATGCACACCAATTGTTTAAAATCAAGCTTCTTTATGGTGACCTTCTTTCAGCGTGTAAGAAACACTTTCACCCCAACAGAGAGATCACAGTGGATGAGAGAATGGTTGCAACCATGGCTAGGATTGGACTCGAGCGATAGAACTATTGACCAACTACATTGGGATGCAGACTTTGTTCTTAATAATTCATCCTGTAGGTACCCATGGAATTTCTTTGTGCATGATGGAAAGAGTTCAGCTTCTTCAGGTAAAGGTGTAGGGTACACTTCTGTAATAAGACTACTTGATGGCAATGTCCTTGGCGAAGGTTATACGCTGACAACATCTATACCAGTCCGACTCTTTTCTCAGAAATGTTGAAGAACAGCATCTTTGCTTGGGGAACTTTGAGTCATAACTCCAATTTATCGAAGGTCAATGACTTAGGTGAAAGATCAGAAAGAGGATCCATTCGGTGGTCTCGAAAAGGTCCACTTCTGTTTGTAAAGTGAAGGGATGCGAGAGAAGTGCTTATGTGTTCCACAATTCACAAAGCATTCCCGTATAATAGTGTCAGCAGACATACCTAAGATGAAGATGGTGTGTGGAAAACATGCGCAAATACAGCAAATATATATGGATGCGGTTGATCTCTCGAATTCCTTTATAgagttttataatgtttttaagacCACAAAATGGTACAAGATGATCCTCTACCATTTTCTTGACATTGCAGTGGTTTAGTTTCATACTTAACCAACAATTGGTGAAAGCCCAAAAAAAGATGCCCATCTTTCACAAAAAGTTCAGGGAAACACTTCGAGTTCGTAAGTGCTGGAAGAGACAGAAACCCTGTGTTCAAAGATCCCTTGACATCTGCTTCCAAAGAGTCTATTGACAATTCGGCACACATGCCTTTCTTCCCGAATGCATATTCGCCCTCCAACACAGAGTCTCCTCCTCCTGACTTGTCCATTCGAACAAAAGAATGCTCTCCAGAGTATTATGGAGCAGATGCAACGAATGGGAGAAAATTTGTGTCGTGCAAAttggaaacaaaaacaaaactccctTATTCTGCTCCTACTGCAAGATAGCGCTGTTTCGTGTCATTGTATAATTGCTTCAAGAAATGGCACCAAGGCGCAACCCCATGAGAtgtgtgaatattttttatatttcgtATTTTATGACCTTTTTACTTTGTATGCGTTTGTTACTTGTATGGTTATGACCACATTAAATATCTTTAAACAgt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-101 No description available

Ensembl:

ensembl_id ENSDART00000134416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036429 lncRNA upstream 557431 50473368 ~ 50504264 (+) True XLOC_017709
TCONS_00036428 lncRNA upstream 557861 50451469 ~ 50503834 (+) False XLOC_017709
TCONS_00036741 lncRNA upstream 729151 50329990 ~ 50332544 (+) False XLOC_017708
TCONS_00035059 lncRNA downstream 90976 51168912 ~ 51172061 (+) False XLOC_017716
TCONS_00035060 lncRNA downstream 90976 51168912 ~ 51173504 (+) False XLOC_017716
TCONS_00035061 lncRNA downstream 92604 51170540 ~ 51172061 (+) True XLOC_017716
TCONS_00035064 lncRNA downstream 121887 51199823 ~ 51202560 (+) False XLOC_017717
TCONS_00035065 lncRNA downstream 123882 51201818 ~ 51202809 (+) False XLOC_017717
TCONS_00035054 mRNA upstream 62291 50956369 ~ 50999404 (+) True XLOC_017711
TCONS_00035053 mRNA upstream 63444 50852356 ~ 50998251 (+) False XLOC_017711
TCONS_00035052 mRNA upstream 63444 50852356 ~ 50998251 (+) False XLOC_017711
TCONS_00035051 mRNA upstream 321291 50650143 ~ 50740404 (+) True XLOC_017710
TCONS_00035049 mRNA upstream 863488 50184934 ~ 50198207 (+) True XLOC_017705
TCONS_00035058 mRNA downstream 26431 51104367 ~ 51123265 (+) True XLOC_017715
TCONS_00035062 mRNA downstream 119822 51197758 ~ 51211840 (+) False XLOC_017717
TCONS_00035063 mRNA downstream 121730 51199666 ~ 51213829 (+) False XLOC_017717
TCONS_00035067 mRNA downstream 234947 51312883 ~ 51334529 (+) True XLOC_017718
TCONS_00035070 mRNA downstream 386734 51464670 ~ 51466071 (+) False XLOC_017721
TCONS_00035033 other upstream 2028577 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 2448259 48613321 ~ 48613436 (+) True XLOC_017687
TCONS_00035022 other upstream 2449325 48612257 ~ 48612370 (+) True XLOC_017686
TCONS_00035021 other upstream 2450385 48611195 ~ 48611310 (+) True XLOC_017685
TCONS_00035020 other upstream 2451228 48610352 ~ 48610467 (+) True XLOC_017684
TCONS_00035066 other downstream 133996 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035075 other downstream 438266 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035099 other downstream 1841920 52919856 ~ 52919986 (+) True XLOC_017742

Expression Profile

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