RNA id: XM_036985193.1


Basic Information

Item Value
RNA id XM_036985193.1
length 1708
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110529713
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26591530 ~ 26596738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGccattgattaaaaaaataattatttttgacttttattttgaagtttGCATTTGAATACCGGAAAGAAAGGAACGGAAATTTAAGCAGCGTTCCATGAACGTAAATAGCAGGATTGGATCTAAGAAAATGGAGCTTCCACCCCACGAAGGATCGGTACTCTCTGTGGTTGACATGCACACAGGTGGAGAGCCTTTGCGCATTATCCTTAGTGGTTACCCAGAGGTAAAGGGCGAGGGTGTGCTATCCAAACGGCGCTACGTGAGAGAGCATCTGGACTACCTACGGAGAGTGTTGATGTTCGAACCAAGAGGACACTATGACATGTACGGAGCCCTGGTCGTGGAGAGTGAGATACCTGAAGCCGACTTGGGGGTTCTTTTCATGCACAACGAAGGTTACAGTAccatgtgtggccacgcagtcatcgCTCTTGGGAGGTTTGCTGTAGACTACAAACTTGTTCAAGAGCCAAGGTCGCCAGAGACGCAGGTGAATATACACTGTCCATGTGGCCTGGTTAAGGCATTTGTGGAGTACTCCAATGGTAAAACCGGAGGTGTGAGGTTCCACAGTGTTCCAGCGTTTGCATTTGCAACAGATGTAATTGTTGCTGTGCCTGGGCATGATGAAGTCACTGTTGATATAAGCTACGGAGGAGCATTCTACGCATTTGTAAGTGCAGAGCGATTTGGCCTGGATATCAACAAGTCCAAGACCAGGGATCTGGTGGATGCAGCTACTGCAGTGACCAACTCTGTCAAATCTCAGGTAAAACTGCATCACCCAACCAGTGAGGACCTGGCCTTTCTCTATGGCACCATCCTCACAGATGGAAAAGATGCCTATTCCCAAGAGCCCACTGCtaacatgtgtgtgtttgcagatGCCCAGGTGGACAGAAGCCCTACAGGTTCAGGGGTCACTGCCCGTGTGGCTCTCCAGTATCATAAAGGCCTCATCCAACTCAACCAGACTAGGACCTTCCAGAGTGGGGCCACAGGATCTCTGTTCACTGGCAAAGCTGTTCAGGACACCACATGTGGAGACTTCAAGGCTGTGGTGGTTGAGGTGGCTGGCAGAGCACACTACACTGGCGTGGCCAGCTTTGTGCAGGAAAGTGACGACAAGCTAAAACTTGGTTTCCTGCTGAAATAGGAGCAGCTACCAGTGCCCACAACCACTTTTGAGTGCATCTCCATCCAAGCAAAGGACCATATCAGATTGCAAAtcaattgtaaaaataaaaaaaaacacacaaaaaacccATCACTCATTGAAGGCCTATGTAGCATCGGTAATGGTCATAAgtattgtgtgtactgtatgcacAGAGTCTGACATAAGAGACATGGCAGACAAGGCTGTTGGAATTCCCTCAAacatctgaatggttaaggtcaacTTCCATGAGCAGGTGTCCAATATAACAAAGTTTGCTCCTGTCCTGTAGTGGTCATAAACACAAAATTAACTAAAAAGTGTTAAGTAGGATAactttggtcataaagtcagtctttaAGGAAACAATGTCTCAGATTTCTTGGATATTTGAGGATTGGGTTTTGATTTCAGTCATGCCCAGTCATCGCCTGGTACAAAGCGATGGGAGAGCTGTGACACACTGGTCTGGACAGGAGTCAGTTTGTTGGTGCAATATACACGCAAAAATTGTTTGAACTTTGATTCTCTCAAACATTTTTCCCCCT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0018112 proline racemase activity molecular_function

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786475 lncRNA downstream 160687 26428702 ~ 26430843 (-) False cenpw
TU786477 lncRNA downstream 160687 26428795 ~ 26430843 (-) False cenpw
TU786476 lncRNA downstream 160687 26428864 ~ 26430843 (-) False cenpw
TU786532 lncRNA downstream 205804 26384583 ~ 26385726 (-) True G690801
TU786506 lncRNA downstream 230215 26361027 ~ 26361315 (-) True G690783
TU786758 lncRNA upstream 118479 26715217 ~ 26715507 (-) True G691008
TU786760 lncRNA upstream 122906 26719644 ~ 26719843 (-) True G691010
TU786790 lncRNA upstream 161402 26758140 ~ 26766768 (-) True G691038
TU786806 lncRNA upstream 197671 26794409 ~ 26794617 (-) True G691054
TU786808 lncRNA upstream 198099 26794837 ~ 26795095 (-) True G691056
XM_021612165.2 mRNA downstream 128169 26444117 ~ 26463361 (-) True LOC110529710
XM_021612166.2 mRNA downstream 128265 26444117 ~ 26463265 (-) False LOC110529710
XM_021612163.2 mRNA downstream 128374 26444117 ~ 26463156 (-) False LOC110529710
XM_021612175.2 mRNA upstream 2292 26599030 ~ 26602934 (-) True LOC110529714
XR_002474429.2 mRNA upstream 574200 27170938 ~ 27186859 (-) False LOC110529723
XR_002474430.2 mRNA upstream 574200 27170938 ~ 27186859 (-) True LOC110529723
XM_036984518.1 mRNA upstream 647821 27244559 ~ 27284467 (-) False esr2a
XM_036984517.1 mRNA upstream 647821 27244559 ~ 27284491 (-) False esr2a
TU786474 other downstream 160687 26429115 ~ 26430843 (-) True cenpw
TU785681 other downstream 600387 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 626037 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 786055 25801964 ~ 25805475 (-) False LOC110529694
TU787231 other upstream 267472 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 718830 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1518998 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 1882079 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 1996603 28593341 ~ 28594431 (-) True G693383

Expression Profile