Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003567 |
| length | 872 |
| lncRNA type | retained_intron |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_001769 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 187760 ~ 196815 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ko04014 | Ras signaling pathway |
| ko05166 | Human T-cell leukemia virus 1 infection |
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-050522-552 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell; head; lateral plate mesoderm; and margin. Orthologous to human ETS2 (ETS proto-oncogene 2, transcription factor). |
| ensembl_id | ENSDART00000158247 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005787 | lncRNA | upstream | 53850 | 121898 ~ 133969 (+) | False | XLOC_001767 |
| TCONS_00005788 | lncRNA | upstream | 62520 | 121926 ~ 125299 (+) | True | XLOC_001767 |
| TCONS_00005786 | lncRNA | upstream | 128071 | 58893 ~ 59748 (+) | True | XLOC_001764 |
| TCONS_00005785 | lncRNA | upstream | 156981 | 30360 ~ 30838 (+) | True | XLOC_001763 |
| TCONS_00003568 | lncRNA | downstream | 60 | 190543 ~ 193882 (+) | True | XLOC_001769 |
| TCONS_00005790 | lncRNA | downstream | 91841 | 282324 ~ 283931 (+) | True | XLOC_001773 |
| TCONS_00005661 | lncRNA | downstream | 207861 | 398344 ~ 398759 (+) | True | XLOC_001776 |
| TCONS_00005791 | lncRNA | downstream | 228750 | 419233 ~ 420892 (+) | True | XLOC_001779 |
| TCONS_00005662 | lncRNA | downstream | 349810 | 540293 ~ 541332 (+) | False | XLOC_001786 |
| TCONS_00003564 | mRNA | upstream | 28222 | 158590 ~ 159597 (+) | True | XLOC_001768 |
| TCONS_00003562 | mRNA | upstream | 71783 | 110879 ~ 116036 (+) | False | XLOC_001766 |
| TCONS_00003563 | mRNA | upstream | 71790 | 111023 ~ 116029 (+) | True | XLOC_001766 |
| TCONS_00003561 | mRNA | upstream | 76691 | 110868 ~ 111128 (+) | False | XLOC_001766 |
| TCONS_00003560 | mRNA | upstream | 106114 | 76864 ~ 81705 (+) | True | XLOC_001765 |
| TCONS_00003570 | mRNA | downstream | 23395 | 213878 ~ 223866 (+) | False | XLOC_001771 |
| TCONS_00003571 | mRNA | downstream | 23454 | 213937 ~ 223885 (+) | True | XLOC_001771 |
| TCONS_00003572 | mRNA | downstream | 61942 | 252425 ~ 257043 (+) | True | XLOC_001772 |
| TCONS_00003573 | mRNA | downstream | 144144 | 334627 ~ 349756 (+) | True | XLOC_001774 |
| TCONS_00003574 | mRNA | downstream | 184559 | 375042 ~ 382616 (+) | True | XLOC_001775 |
| TCONS_00003569 | other | downstream | 21299 | 211782 ~ 211947 (+) | True | XLOC_001770 |
| TCONS_00003583 | other | downstream | 316080 | 506563 ~ 507256 (+) | True | XLOC_001784 |
| TCONS_00003590 | other | downstream | 614761 | 805244 ~ 805359 (+) | True | XLOC_001790 |
| TCONS_00003597 | other | downstream | 1474439 | 1664922 ~ 1665038 (+) | True | XLOC_001797 |
| TCONS_00003605 | other | downstream | 1985100 | 2175583 ~ 2267357 (+) | False | XLOC_001805 |
