RNA id: TCONS_00005789


Basic Information

Item Value
RNA id TCONS_00005789
length 1673
lncRNA type sense_over
GC content 0.52
exon number 6
gene id XLOC_001769
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 187760 ~ 196815 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacacagataaacaaacacacacaccgcgAACGATTTAGGAATATAAACCAATCGATCGACCGGAGGAGGGAAACACTGCAGCGCAAGCACCGCGGATTATTGAGTTATTCCTGTCAGAATTCAACAGGTCAGTGGATCATCATCCCTCAGCGTCAGAGTCAGTGCTCGGTCTCAGTGTGTAAAATGGAGTCGCTTTTACCTGGATTCAGAAACACACTCAAGCGTCAGGCAGCGTTTGAGCTGTTTGAGGACCCCATGTCCCTGTTCTCCGGCTTCTGTCCCCTGGAGGAGGAGCAGGCGGCTCAGGAGGTCCCGTCCGGCCTGGACTGCTTCCCTCAGGATGCTGGTGTGTGTTCGGTTCCTCTGCTGACGCCCTGCAGTAAAGCTGTGGTCAGTCAGGCTCTGAAGGACAGCTTCAGCGGGTTCTCCAAAGTCCAGCGCATCTGCGGCATCTCTGACAGTGAGTGTCCTGCTCTCcgctgagctgtgtgtgtgtgtgtgtttctatcaTAGGATGCTAATAAGATttgtgtgcaaaactggaatatctaGTAAATGATCAGTGAGTAGAGCAGTGTGTCCATCAGCGCTGCACAGTAGAGCATCTCCTCCTCACTCCTGCACAGATATCACTGAGAGAAGTGGAGTCACTGCTGTTTGTTCTCCTCTAATGAATGAGCTGCACCTCAGAACACCAAACCAATGAACACAGTGAATGAGGAGGCTTCAGGAGGAGTGAGACAGcagcgcagacagatgctcaagacagttctggagggaataataatagaagaagaagaagaatactgAAGCCCTGTGATGACGGACTGACGGAGGCCTGAGACAGAACAACATTTCACATCTGACACAATGGAGAGCTGGAAACACAGAGAGCTGCAGACCAacatcaatcacacacacacacacacacaccctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacatttatatctgtcaGTTCATCGGATCAGCACTGAAGCGCACACACTGATGCTTTACTCAGTACAGCTGATCACTGCACAGTGTAGCGCAGTTACTCTTATCTGAGTTTACTACACATGTGCGTTTTCCAAATGTAagcacatcttggtgtttccgTTAATAATTCCAAATGCACATGAAAACAGGTGTATGTACACAGCCGTGTGCCTGATCTCCGCTGTGTCCCGCAGACCCGCGCAGGTGGACGAAGCAGCAGGTCCTGCAGTGGCTGTACTGGGCGTCCGGAGAGTTCAGCCTCACCAACATCAGCTTCTTCAGCTTCGACATGAGCGGACGGGAGCTCTGTGAGCTGGGCAAGGACAGGTTCCTGGATCTGGCTCCGGATTTCGTGGGGGATATTCTGTGGGAGCATCTGGAGCAGATGATGAGAGGCTGTGTGGAGGACGAGGAGCTGAAGGTGTCTGACTGCAGCTGGCCCAGCAgtctcAGTCTGGACGAGTGCTCTCTGACGGCTCCGAATCCTCACAGTAGTCTCCTGCGAGAGCTCTTCCAGACGTCTGATGATGCGGCTCTGCTAGCGTCCGCCGCGGAGCTCCCGGCGTGTGCTAAGCCTCAGCTCAGCACGGTCAGCGTCCGCTACAGGAGCCACGAGTTCACCAAAAACACTCCGCAGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko05166 Human T-cell leukemia virus 1 infection
ko03000 Transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005787 lncRNA upstream 53850 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005788 lncRNA upstream 62520 121926 ~ 125299 (+) True XLOC_001767
TCONS_00005786 lncRNA upstream 128071 58893 ~ 59748 (+) True XLOC_001764
TCONS_00005785 lncRNA upstream 156981 30360 ~ 30838 (+) True XLOC_001763
TCONS_00005790 lncRNA downstream 88442 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005661 lncRNA downstream 204462 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005791 lncRNA downstream 225351 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005662 lncRNA downstream 346411 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 346550 540432 ~ 543582 (+) False XLOC_001786
TCONS_00003564 mRNA upstream 28222 158590 ~ 159597 (+) True XLOC_001768
TCONS_00003562 mRNA upstream 71783 110879 ~ 116036 (+) False XLOC_001766
TCONS_00003563 mRNA upstream 71790 111023 ~ 116029 (+) True XLOC_001766
TCONS_00003561 mRNA upstream 76691 110868 ~ 111128 (+) False XLOC_001766
TCONS_00003560 mRNA upstream 106114 76864 ~ 81705 (+) True XLOC_001765
TCONS_00003570 mRNA downstream 19996 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003571 mRNA downstream 20055 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003572 mRNA downstream 58543 252425 ~ 257043 (+) True XLOC_001772
TCONS_00003573 mRNA downstream 140745 334627 ~ 349756 (+) True XLOC_001774
TCONS_00003574 mRNA downstream 181160 375042 ~ 382616 (+) True XLOC_001775
TCONS_00003569 other downstream 17900 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 312681 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 611362 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1471040 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1981701 2175583 ~ 2267357 (+) False XLOC_001805

Expression Profile

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