RNA id: TCONS_00035408


Basic Information

Item Value
RNA id TCONS_00035408
length 1027
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_017959
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 13750537 ~ 13774826 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTCAGTTCTGGGGAATGGAGTCGTGTTGGTCATCTCGTATCGCCGCAGGAAGAAGATAGCCGGTTCAGAGCTGCTGTGTGTCAATTTGGCGGTGGTTGACTTTCTTTGCTGCATCTGCTTCTACCCACTGTCCATCCTGTCGTCTTTTAGCCACGTATGGCTGGGACGTCACATTACCTGTGTGTATTATGGTCTGGGCTGCTACATCTTTGGCCTCTGCGGCATGTTTACCATTGCCGCCATCAGCGTCATTCGCTACATCAAGACTTGTTATGCTATCTGGCTTGAAGGAGTCAACATACGCCTGGTTTGTGTAGCCACATGGTTAATTGCTGCTGTTTGGTCGTCCTTTCCGCTGTTCGGATGGGGCGAGTACGTGCCTGAACCATATGGCATTTCTTGCACCATAGCCTGGCGCCGTTACCATACATCCACAAAAGATGCTATTTATGTGATCTGCTCCTTTGCCTGCTTCGTGCTTCTTCCTGTCCTGCTTATCATGGTCTCACAGTGCAAAATCTTGCTGAAGATCTATCGCTTTTCACGCACACTTTCTGCTAGAGGCATTCACTGCAACCTCCGCCATGCAGAAAAACACCTTTCTGTGATGTTTTTCTGCATAAGTTTGGGCTTTATCCTTGCCTGGGCTCCCTACGCTGTTGTTTCCTTCCTATTCATCTTCCACAAAGACGCTCAGTATATGGCACCAGAAGGCTTCATCTTCCCTGCACTATTTGCTAAAAGCTCCCATGTCTACAACCCGTTCATTTACTTTTACTtcaataaagcttttagacaGGAGCTGCGAAACCTTCTATTCTCATTGTTCCCGAAACTTGCCCTCAACCGTGTTGGAGTGTACACAGACAATGGTGTTCATCCCATTCAGATCCAACTACAGGAGCAGGCGGTGGCTCGTGCTGGTAGAGGACCTAACCTACTTAGAGACCAGAGTGACCAAAACCCAGGTCTCTATAGTCAGATGATCTGCTGGGTCTCCAAGGTAGAAGTGACACCCAGCAATG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007602 phototransduction biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-51 Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; integument; and testis.

Ensembl:

ensembl_id ENSDART00000133529

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035405 lncRNA downstream 95436 13654585 ~ 13659433 (-) False XLOC_017958
TCONS_00036810 lncRNA downstream 441859 13309282 ~ 13313010 (-) False XLOC_017953
TCONS_00036809 lncRNA downstream 441859 13309282 ~ 13313010 (-) True XLOC_017953
TCONS_00036808 lncRNA downstream 441922 13309282 ~ 13312947 (-) False XLOC_017953
TCONS_00036457 lncRNA downstream 826914 12927182 ~ 12927955 (-) True XLOC_017949
TCONS_00035410 lncRNA upstream 129169 13894918 ~ 13896672 (-) True XLOC_017961
TCONS_00036811 lncRNA upstream 232562 13998311 ~ 14001001 (-) True XLOC_017962
TCONS_00035414 lncRNA upstream 261104 14026853 ~ 14027677 (-) False XLOC_017964
TCONS_00035415 lncRNA upstream 261565 14027314 ~ 14028035 (-) True XLOC_017964
TCONS_00035424 lncRNA upstream 694350 14460099 ~ 14462995 (-) True XLOC_017969
TCONS_00035406 mRNA downstream 32355 13673384 ~ 13722514 (-) True XLOC_017958
TCONS_00035403 mRNA downstream 81303 13647987 ~ 13673566 (-) False XLOC_017958
TCONS_00035402 mRNA downstream 94102 13647987 ~ 13660767 (-) False XLOC_017958
TCONS_00035404 mRNA downstream 94269 13649645 ~ 13660600 (-) False XLOC_017958
TCONS_00035401 mRNA downstream 114271 13632527 ~ 13640598 (-) True XLOC_017957
TCONS_00035411 mRNA upstream 237311 14003060 ~ 14012859 (-) False XLOC_017963
TCONS_00035413 mRNA upstream 249064 14014813 ~ 14054083 (-) False XLOC_017964
TCONS_00035416 mRNA upstream 331109 14096858 ~ 14114078 (-) False XLOC_017965
TCONS_00035417 mRNA upstream 332321 14098070 ~ 14114151 (-) True XLOC_017965
TCONS_00035418 mRNA upstream 378540 14144289 ~ 14206698 (-) False XLOC_017966
TCONS_00035395 other downstream 385526 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 546117 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035389 other downstream 614642 13020489 ~ 13140227 (-) False XLOC_017951
TCONS_00035387 other downstream 1147448 12605718 ~ 12607421 (-) True XLOC_017943
TCONS_00035374 other downstream 3701168 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035409 other upstream 52646 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035412 other upstream 237725 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035421 other upstream 689159 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035480 other upstream 3877060 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 4018698 17784447 ~ 17784568 (-) True XLOC_017999

Expression Profile

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