RNA id: TCONS_00035414


Basic Information

Item Value
RNA id TCONS_00035414
length 225
lncRNA type retained_intron
GC content 0.42
exon number 2
gene id XLOC_017964
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14014813 ~ 14054083 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTAGGTTTTTACATTTTAGCATCAGTATGGAAACAAAATGGTTTCTTAACATCTTTGTGCTTGTTTATTCCAGTGTTTCACCAACTTATCAGGCAGCTGGGTTGGCATCATCTCTGGGGTTTGCTTTGGTTGGTGGGTTGATCACAGGTCTAATTATGAAGATTCCGTTTTTGGGACAGCCACCCGACCAAAACTGCTTTGATGACTCAATCTACTGGGagg

Function

GO:

id name namespace
GO:0015840 urea transport biological_process
GO:0072488 ammonium transmembrane transport biological_process
GO:0015696 ammonium transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-030131-8229 Predicted to enable ammonium transmembrane transporter activity. Acts upstream of or within ammonium transport and urea transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including ball; cardiovascular system; gill; hematopoietic system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Rh deficiency syndrome; hemolytic anemia; and overhydrated hereditary stomatocytosis. Orthologous to human RHAG (Rh associated glycoprotein).

Ensembl:

ensembl_id ENSDART00000152347

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036811 lncRNA downstream 25852 13998311 ~ 14001001 (-) True XLOC_017962
TCONS_00035410 lncRNA downstream 130181 13894918 ~ 13896672 (-) True XLOC_017961
TCONS_00035405 lncRNA downstream 367420 13654585 ~ 13659433 (-) False XLOC_017958
TCONS_00036810 lncRNA downstream 713843 13309282 ~ 13313010 (-) False XLOC_017953
TCONS_00036809 lncRNA downstream 713843 13309282 ~ 13313010 (-) True XLOC_017953
TCONS_00035424 lncRNA upstream 432422 14460099 ~ 14462995 (-) True XLOC_017969
TCONS_00035436 lncRNA upstream 845353 14873030 ~ 14873330 (-) True XLOC_017973
TCONS_00036458 lncRNA upstream 1057409 15085086 ~ 15086084 (-) True XLOC_017976
TCONS_00036459 lncRNA upstream 1066424 15094101 ~ 15096826 (-) True XLOC_017977
TCONS_00036460 lncRNA upstream 1603561 15631238 ~ 15633493 (-) False XLOC_017980
TCONS_00035411 mRNA downstream 13994 14003060 ~ 14012859 (-) False XLOC_017963
TCONS_00035407 mRNA downstream 252027 13750537 ~ 13774826 (-) False XLOC_017959
TCONS_00035408 mRNA downstream 261104 13754869 ~ 13765749 (-) True XLOC_017959
TCONS_00035406 mRNA downstream 304339 13673384 ~ 13722514 (-) True XLOC_017958
TCONS_00035403 mRNA downstream 353287 13647987 ~ 13673566 (-) False XLOC_017958
TCONS_00035416 mRNA upstream 69181 14096858 ~ 14114078 (-) False XLOC_017965
TCONS_00035417 mRNA upstream 70393 14098070 ~ 14114151 (-) True XLOC_017965
TCONS_00035418 mRNA upstream 116612 14144289 ~ 14206698 (-) False XLOC_017966
TCONS_00035419 mRNA upstream 119657 14147334 ~ 14259032 (-) True XLOC_017966
TCONS_00035420 mRNA upstream 230868 14258545 ~ 14321359 (-) True XLOC_017967
TCONS_00035412 other downstream 14027 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035409 other downstream 208343 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035395 other downstream 657510 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 818101 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035389 other downstream 886626 13020489 ~ 13140227 (-) False XLOC_017951
TCONS_00035421 other upstream 427231 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035480 other upstream 3615132 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 3756770 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035486 other upstream 4326732 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035494 other upstream 4746452 18774129 ~ 18776493 (-) False XLOC_018010

Expression Profile

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