RNA id: TU805967


Basic Information

Item Value
RNA id TU805967
length 2042
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G708736
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41974081 ~ 42291085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGGTTCTTTTGTTCAGTAGTGTGtatagcagtggttctcaaccttttTTTGGGGTACTGGAACCACTGCATATTTTGAGGCAAGGCAGGCAAGGTTTTGAGCAGTCCTTAGGGACCTTCACCCCCTCTATATTGTATGTAAAGTTAGTGGAAACCTTGTGGTACTGAATACATTCATTATACTTTTTGATTTCACGGACCCCTAGGTGTCCATGGAcgatgtagtttggtcctctacggtttgaatggaatagaggagatttcacgttgtaacttttttatgttgcagtgtttttgtacatgagttgttgtattttggtactgtcaacactgaaagcacctagcaatgtattggggatgtgtgttttaccttgctcctgtgtagaacaacttgtcagatggGGACTGATGTGtttctgtcctgtcttttcacaatactattgGAGATCAACATAAAGCCTAAAAGACAGCCGTGGTgtcgctcttcatttcttggttctcctgtggtaCATAAGAAACCCGCTACACTTTGGCATATGATTGCTGTAAataagtgtgttagctagcatacaccgatgtaattgtcccttctaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagagagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccctccaaagttgatatcagattttagcccctgctagggcagatggcacacagacaacagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtgctacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataacaagaaaggctggttgtaaaagcacatatacctgcatacatactggactgataaggaacactgttTTTAATTttgattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccttctaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagttattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806017 lncRNA downstream 31625 41932539 ~ 41942456 (-) True G708769
TU806006 lncRNA downstream 42560 41922915 ~ 41931521 (-) True G708762
TU806010 lncRNA downstream 44129 41911585 ~ 41929952 (-) True G708764
TU806008 lncRNA downstream 49882 41883351 ~ 41924199 (-) False G708762
TU806005 lncRNA downstream 89655 41870434 ~ 41884426 (-) True G708761
TU806086 lncRNA upstream 25055 42246963 ~ 42310645 (-) False G708827
TU806087 lncRNA upstream 31196 42253104 ~ 42310645 (-) False G708827
TU806088 lncRNA upstream 32665 42254573 ~ 42310645 (-) True G708827
TU806092 lncRNA upstream 36667 42258575 ~ 42259716 (-) True G708830
TU805979 lncRNA upstream 58791 42280699 ~ 42284286 (-) True G708740
XR_005053021.1 mRNA downstream 245094 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 1004603 40958142 ~ 40969478 (-) True LOC110529916
XM_021612576.2 mRNA downstream 1004607 40958142 ~ 40969474 (-) False LOC110529916
XR_005052877.1 mRNA downstream 1174044 40779851 ~ 40800037 (-) False LOC118965517
XM_036985477.1 mRNA upstream 118774 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 118774 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA upstream 118774 42340682 ~ 42420087 (-) True klhl18
XM_021612584.2 mRNA upstream 209883 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 209883 42431791 ~ 42526527 (-) False puf60a
TU804129 other downstream 2014468 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 2747768 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 3660278 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 3935735 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4481924 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 497863 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 948852 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2316885 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3235869 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 4089222 46311130 ~ 46325681 (-) True crfb16

Expression Profile