RNA id: TCONS_00035702


Basic Information

Item Value
RNA id TCONS_00035702
length 1693
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_018113
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26709009 ~ 26822550 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGACTGCAGGTTTCTGATGTGTCTCTCCAGCAGCTGGAGTTTCGGATGTGTTTGCATCCGTAGTTGATAAACGAACGCACACAGCGGAACCAAACCACATACACTCGGTCAGAACAGAAACCCGCTCCAGAGAATGGCTCAGTGTACAGCAACGACGACTGGTGGCGGTATGAACGGAGACAGCAAGAGGAAGAGGAAAGTGGCTATCATTACAGGCATAACCGGTCAGGATGGGTCCTACCTGGCAGAGTTGCTCTTGGCTAAAGGTTATGAGGTTCACGGTATCCTCCGCAGGTCCAGTTCTTTTAACACGGGTCGGATCGAGCACCTTTATCATAACCCTCAAACGCACACAGAAGGAAACATGAAGTTGCACTATGGAGACTTGACCGACAGCACGTGCTTGGTGAAGATCATCAATGAAGTCAAACCCACAGAAATCTACAACCTCGGAGCACAGAGCCAcgtcaagATCTCCTTTGACCTGGCCGAGTACACAGCAGATGTGGACGGGGTTGGAACCCTTCGGCTGCTGGATGCAGTGAAGACCTGCGGTTTAACTGACACCGTCCGCTTCTACCAGGCCTCCACCAGCGAGCTCTATGGGAAAGTACAGGAAATTCCCCAGAAAGAAACCACGCCATTTTACCCGCGATCGCCTTATGGTGCTGCTAAGCTCTATGCATACTGGATCGTTATAAACTTCAGGGAAGCCTATAACCTCTTTGCTGTGAATGGGATCTTGTTCAATCATGAGAGTCCTAGAAGAGGTTCAAATTTTGTAACTAGAAAGATCAGTCGCTCCGTGGCGAAGATCCACCTCGGGCAGTTGGAGTGCTTCAGCCTGGGCAATTTGGACTCCATGCGAGACTGGGGTCATGCCAAAGATTATGTGGAGGCGATGTGGCTGATGTTGCAGCAGGAGGAGCCTGTGGATTTTGTCATTGCAACCGGGGAAGTACACAGTGTTCGAGAGTTTGTGGAGAGAGCCTTCAAACACGTGGGCAAAACCATTGTCTGGGAGGGGAAGGATGAGAAGGAGGTGGGCCGCTGTCAGGAGACAGGAGTCATTCATGTGAGGGTTGATCCGAAATACTACCGGCCAACTGAAGTGGACTACTTGCAGGGAGACAGTTCCAAAGCCTTTAAGGTTCTAGGCTGGAAACCACGTGTAACATTTGAGGAGCTTGTTAAAGAAATGGTGGACGCGGACATCAAGCTCATGCAGAACAACCCAAATGCCTGAACCCACACGCCTTCATCTCCACGCATGCCAAAGAGGcgcttgttttgtgtttgtgtagcCAATGGAAGAAGCACTCAAATGCATTTCTGTTGCTCCGTCTGTCATTTTCTCTTCTGATAACACTTTCCCTGTGTTCTTAGGGTCCTTGGTTGttgcctttttacatttttaaatactttaatatttatGATTGTGTGTTTGGATACTTAGTTGATTCTGTTGAaatgatttttattcatttttataaagtggtttttatttgtaatcatggaaaaaagtataaataaggGATAAAGGGTTTGTAGAGCTTTTTAAAGTTCTCTAATGCCGTTTAATTCATGTGATTGTTTGAATGGAAATAATGTCATTAATTGGTTTGAAAACGTTTTAAAAAAGTCTCCTGTTCCTATTTAAGATTCAAATACAGAATATGAAGTtctttcaa

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0021564 vagus nerve development biological_process
GO:0019673 GDP-mannose metabolic process biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0010842 retina layer formation biological_process
GO:0042351 'de novo' GDP-L-fucose biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008417 fucosyltransferase activity molecular_function
GO:0008446 GDP-mannose 4,6-dehydratase activity molecular_function
GO:0070401 NADP+ binding molecular_function

KEGG:

id description
ko00051 Fructose and mannose metabolism
ko00520 Amino sugar and nucleotide sugar metabolism
ko00541 O-Antigen nucleotide sugar biosynthesis

ZFIN:

id description
ZDB-GENE-050419-45 Enables fucosyltransferase activity. Acts upstream of or within Notch signaling pathway; central nervous system development; and retina layer formation. Predicted to be active in cytoplasm. Is expressed in EVL; corneal epithelium; neuromast; and periderm. Used to study congenital disorder of glycosylation type IIc. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human GMDS (GDP-mannose 4,6-dehydratase).

Ensembl:

ensembl_id ENSDART00000046764

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036847 lncRNA downstream 483 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036846 lncRNA downstream 527 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00036845 lncRNA downstream 157776 26548237 ~ 26551233 (-) False XLOC_018110
TCONS_00035697 lncRNA downstream 158206 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00035696 lncRNA downstream 158249 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00036848 lncRNA upstream 109518 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA upstream 112452 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00035713 lncRNA upstream 136983 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00035725 lncRNA upstream 481298 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00036849 lncRNA upstream 1292214 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00035699 mRNA downstream 84967 26572456 ~ 26624042 (-) False XLOC_018111
TCONS_00035700 mRNA downstream 120273 26576373 ~ 26588736 (-) False XLOC_018111
TCONS_00035695 mRNA downstream 157799 26543683 ~ 26551210 (-) False XLOC_018110
TCONS_00035693 mRNA downstream 171838 26535342 ~ 26537171 (-) False XLOC_018109
TCONS_00035694 mRNA downstream 172428 26535700 ~ 26536581 (-) True XLOC_018109
TCONS_00035706 mRNA upstream 4715 26827265 ~ 26846028 (-) False XLOC_018114
TCONS_00035707 mRNA upstream 4715 26827265 ~ 26866111 (-) False XLOC_018114
TCONS_00035708 mRNA upstream 6320 26828870 ~ 26841544 (-) True XLOC_018114
TCONS_00035709 mRNA upstream 98131 26920681 ~ 26929685 (-) False XLOC_018115
TCONS_00035710 mRNA upstream 106365 26928915 ~ 26936887 (-) False XLOC_018115
TCONS_00035701 other downstream 120099 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 157776 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035691 other downstream 197736 26502486 ~ 26511273 (-) False XLOC_018108
TCONS_00035690 other downstream 220064 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035681 other downstream 317052 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035715 other upstream 231545 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035722 other upstream 402262 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035726 other upstream 485866 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035747 other upstream 1788722 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 2010212 28832762 ~ 28842571 (-) False XLOC_018139

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_05334527_05357747.mRNA True 2114 mRNA 0.41 10 CI01000325 5334527 ~ 5358762 (-)