RNA id: TCONS_00035709


Basic Information

Item Value
RNA id TCONS_00035709
length 2460
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_018115
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26920681 ~ 26937453 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGAGATTATACTCGAAAATAACGACCAGTACAGCTGCTCTGTGTGTCTGGACTTACTGAAGGATCCGGTGACAATTCCTTGCGGACACAGTTACTGCATGAGCTGCATCAATGAGTGCTGGAATAAGGACCAGAACGGACCATATAAATGTCCACAGTGCAGACAGACCTTCAGCTCAAAGCCTCCACTGAACAGAAGTACAGTCCTTGCTGAGATTATGGATAATTTGAGGGCCAAAGAGTCTCCTCAAAGTCCTGCGGGACCTGGAGAGATTGCGTGTGATTTCTGTGTTGGAGAAAGCATCAAAGCTGTCAAGTCTTGTTTGGAGTGTCGAGCATCTTACTGTGAATTACATGTACAGCCACACTATAATGTTCCTGCTTTGAAGAAACACGTGCTGGTGAAAGCGTCCACCATCCCAGTTTGCTCCAAACACGACAAGCTCCTGGAGGTCTACTGTCGAACCGACCAGACCTGTGTCTGCGCACACTGCTTAATGGATGACCACAAGGGCCACGACACAGTGCCATCCACAACAGAGCGCAAGGAGAAAGAGATGCAACTTAAAGACACTCAAACAAAAGTCAAGCAGACAATCCAGGCCAAAGAAAAGGAGCTGcagaaaatgaaaaaagacaTCATGTCTCATTCAGATTCTACGAAGGCAGCAGTGGAAAACAGTAAGAACGTCTTCACTGATTTAGTCAAGCTTATTGAGAAAAGAAGCAGTGAGATGACCGAAAAGATAAAAGCTCAAGAAAAGGCTGATCTGGATCAAGGCAGAAAACTACAAGAAAAGGTAAAGGTGGAAATAACGCATCTGAAGAAGAGAGAAGGAGTACTGGAGACACTTTCGCACACAGACAACAACATCCACTTTCTTCAGAATTATGAGTCTGTGTTGTGTTCTGGGTCTGATGGCTTTCCGAGCCATTCTTTTAAGCCTGGATGCTCGTATACAGATGTAAACAAACTTCTCTGCCAACTTAAAGAGCAACTAGAAGCTGTTTTCAACCAGAAAATAAACGAAACGTTTCAGAAAGTTTCAGATCTGACCACAAAAAACAATCCAAGCTGCATTAATGTTGGAGACAGAGTCCGAGTGAAAGAGTCTATTAAAAGGCCAAAATATGACTGGGGAAAAGGTGTCACGCATAAGAGTGTTGGTGTGGTGAAAGATATTAAAAGCGATAAGAGTTTGGTCGTCGACTTTCCTGGATCTGCAGGTTGGAAAGGAATTCTCTCTGAAATGGAGCCAGTAAACGATGATGTTGAATGtgGATCTTCAACTCTCACCTGCAATATTAAAATTGGAGACAAAGTCTGTGTGAAGCCGTCTGTTGAAACACCAATGTATGGATGGGGTTCGATTACCAACAAAAGCATTGGCAGTGTTATAAATGTGCAGGGTGAGACTGTGACAGTTCATTTCCCTGAGCAGGAAGGTTGGATTGGAGATGTTTCAGAAGTGGTGCTTGCAGGGAACACTGATTTGGAATCCTCCACTCACGTATCCTTCAAAATTGGAATGAGAGTCCGGGTGAGACCCTCAGTAAAAGACCCAAAACATGGATGGGGATCAGTCATTCGCAACAGCATTGGTGTCATTAAAAAAATTGAGGGTGGGTCTTTAACTGTGGATTTCCCTGAACAGACAGACTGGACTGGTGAGGTTTCAGAAATGGAGCTCTTCACTAGTGATGTTTCAGgACCCCTCAGTTTAAGCCCTGGATCAAGAGTCCGCGTAAAATCCACCGTCAGCACTCCAGCTCATGGTTGGGGAGGCATCACTAAACACAGCATTGGACTGGTTACAGCAATTAATGGCACCAAAGTCACTGTGAAGTTTTCTGAACAGTCTAATTGGACTGGCATTGTCTCAGAGATGGAGGTGGTGCCTTAATAATATCCAAGATCCAGGAGCTGTCGATTACATTCAGATGCTCAGACTttttaatatatactttttttggaCAGTGGTGTAATGGATGGGCATGTAGAAATACTCCCTCTGTAACACAATCTCTGATATATTATGGCCCGTTTTCAATGAGTGGTagggtacagtatggtacggttcggttcccgggcttaaacaaaccttgtcgttgtcttgatgaacagccacaaagccaaaaagaagagccgttttaccctgtgccccttagtttttttatgagccagtctgaagcgcgagcggttttgctttcttgcttgcgctcgctGCGCATCTAAAtctgaaataataaaattcttgagctgatgataataacgtgcgcttgattattgacgtgcttataaaacccgatcctgtcagaaactgacaaacTCAAGAGTAAAGCGCGAGAAGTTGGAAAAAAGGAGAACACTttttttcagcaaacgtgaacaaactgccatgtttaactattatcatcaccttttggactattatgaactcagaatgatggaattT

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060126-4 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDART00000132556

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036847 lncRNA downstream 212155 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036846 lncRNA downstream 212199 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00036845 lncRNA downstream 369448 26548237 ~ 26551233 (-) False XLOC_018110
TCONS_00035697 lncRNA downstream 369878 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00035696 lncRNA downstream 369921 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00036848 lncRNA upstream 2383 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA upstream 5317 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00035713 lncRNA upstream 29848 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00035725 lncRNA upstream 374163 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00036849 lncRNA upstream 1185079 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00035707 mRNA downstream 54570 26827265 ~ 26866111 (-) False XLOC_018114
TCONS_00035706 mRNA downstream 74653 26827265 ~ 26846028 (-) False XLOC_018114
TCONS_00035708 mRNA downstream 79137 26828870 ~ 26841544 (-) True XLOC_018114
TCONS_00035702 mRNA downstream 98131 26709009 ~ 26822550 (-) False XLOC_018113
TCONS_00035703 mRNA downstream 98131 26709011 ~ 26822550 (-) False XLOC_018113
TCONS_00035711 mRNA upstream 1811 26931496 ~ 26937453 (-) False XLOC_018115
TCONS_00035714 mRNA upstream 119838 27049523 ~ 27086143 (-) True XLOC_018117
TCONS_00035716 mRNA upstream 161223 27090908 ~ 27092290 (-) True XLOC_018119
TCONS_00035717 mRNA upstream 185189 27114874 ~ 27152495 (-) False XLOC_018120
TCONS_00035718 mRNA upstream 185189 27114874 ~ 27190393 (-) True XLOC_018120
TCONS_00035701 other downstream 331771 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 369448 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035691 other downstream 409408 26502486 ~ 26511273 (-) False XLOC_018108
TCONS_00035690 other downstream 431736 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035681 other downstream 528724 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035715 other upstream 124410 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035722 other upstream 295127 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035726 other upstream 378731 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035747 other upstream 1681587 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 1903077 28832762 ~ 28842571 (-) False XLOC_018139

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_05430077_05434997.mRNA False 1322 mRNA 0.40 8 CI01000325 5430010 ~ 5435253 (-)