RNA id: TCONS_00036479


Basic Information

Item Value
RNA id TCONS_00036479
length 1753
lncRNA type sense_over
GC content 0.48
exon number 1
gene id XLOC_018161
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30032628 ~ 30035326 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCTGCTAGAGTCTATCAAGAGGGAAAAGTGTGTTTGAACATGGTGCAGCAGACGGACCACAGCGAGACGGAGAGCAGCGTTTCGCGAGAGACCACAGACACCGAGGAGAGCGAAATGATGGCTTGCAGCCCGGTGCCACCGAAACCGGACTGGTGCAAGACAGCCACCGGCCACATCAAACGACCCATGAATGCGTTTATGGTATGGTCCAAAATCGAGAGGAGAAAAATCATGGAGCAGTCTCCAGACATGCACAACGCAGAGATCTCCAAAAGGCTGGGGAAGCGGTGGAAAATGCTGAAGGACAGCGAAAAGATTCCCTTTATCCGCGAAGCCGAGCGGCTCCGGCTCCAACACATGGCTGACTACCCCGACTACAAATACAGACCCAAGAAAAAACCAAAGCTCGACAGCTCCTCAAAACCAGCAGTGCAGTCGCCGGAGAAGATTAGCAAAAGTGTCAAAGCAGCCGCAGGGAAGAAGTGCGCCAAACTCAAGCCCAGCAAACCGGGGAACATTACCGCCAGAGCATCCACACAAGACTGCAGATTCAACTATGTTTTCACAAACTTAAAAGTGACCAAGTCTATCAAAAGGGAACTTACTGACGACGAAGACgacgacgacgatgatgatgatgacgacgacgaGGAGGATGACTACGAGGACGAGGAGCACATTAGGCTGCACAACGTCCCCGCGAGCCCCACGCTGAGCTCCGCTGCGGAGTCCGAGCATGGCGCGAGCATGTACGAGGAGTCCCGGCACACGAGCGCGACTCACGGCAGCAGACTGTTTTACAACTTCAAGAACATTACCAAGCAGAGCGCAGCTTACCCTGCCTCGGTGTCACCAGCATCTTCTTTCAGGTCAGTCTCCTCTTCGTCCAGCAGCTCCAGCGAGGACTCCGACGACTTGCTGGTGGACTTCAGTTTGAACTTAGCGGCGGGCTCTCACACCGCGGACTTGGGGAACACTTCAGGAAACCTTTGCCTCTCTCTGGTGGATAAAGATTTGGACTCGTTCAGCGAGGGCAGCCTCGGTTCTCACTTCGAGTTCCCGGACTATTGCACTCCCGAGCTCAGTGAGATGATCGCGGGAGACTGGCTGGAGGCGAACTTTTCAGACCTGGTTTTCACTTACTAACTGACAAACTCCTCCATGACCAAGGAGGCATTGCGCATCTTCAGGTTATTTTTTGACTCTGCCTCGGTGGTTGTCCCGGTTTAGACGGAGGAACGTGCGTTACGAGACGCGTAACGTTAAGAAAAAAAGTGACAACATGGTCCAAACATTGactgtgctgtgtgtgtatggCAAGCTCTTTTAACATTTACTCCTTGAAACTGCACGGTATGGTCTTATTTGACCATCACTCAAATGCCAGTGAATGACACacaaggatttattttatttctagtaCTTTAGCGAAAACACTTTATTCCTTTGCTGCTAGTCACTATCACTTATGGCAAGTAACTCTTGTGCTATTAATTTTAACAAATTGTAACATGTTTTCTCAGCTGATTGAAATGTTATTGCTGGCACATTCTCCAATTTTGCCTGTacctaatactactaataatattaagcCATTCCATTTGGTACTAATCTAGTATAGTGACCTGAAGAATTAAATTATAGggtattatataaataaattgctaGTGAATTTGAGACACTAACCACTATTGAATCACTAATAAGTACAAGTcacttgaaaaaaattaatgctAGTTAGTTAGAAAGC

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:1903670 regulation of sprouting angiogenesis biological_process
GO:0046548 retinal rod cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0009611 response to wounding biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036857 lncRNA downstream 99800 29927185 ~ 29933758 (-) True XLOC_018160
TCONS_00036856 lncRNA downstream 199020 29789942 ~ 29834538 (-) True XLOC_018158
TCONS_00035800 lncRNA downstream 342093 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00036855 lncRNA downstream 344150 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035795 lncRNA downstream 407070 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00036480 lncRNA upstream 56949 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00036858 lncRNA upstream 88180 30123490 ~ 30257999 (-) False XLOC_018163
TCONS_00036481 lncRNA upstream 88191 30123501 ~ 30187184 (-) False XLOC_018163
TCONS_00036859 lncRNA upstream 110864 30146174 ~ 30201114 (-) False XLOC_018163
TCONS_00036860 lncRNA upstream 110864 30146174 ~ 30257999 (-) False XLOC_018163
TCONS_00035803 mRNA downstream 169028 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA downstream 169168 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035802 mRNA downstream 246348 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035801 mRNA downstream 246366 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035797 mRNA downstream 349775 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035806 mRNA upstream 320126 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA upstream 325843 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035809 mRNA upstream 337042 30372352 ~ 30377221 (-) False XLOC_018165
TCONS_00035810 mRNA upstream 337043 30372353 ~ 30376433 (-) True XLOC_018165
TCONS_00035815 mRNA upstream 858783 30894093 ~ 30901034 (-) False XLOC_018172
TCONS_00035788 other downstream 538123 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 983513 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 1157684 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 1190987 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1421236 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 337353 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 337897 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 338555 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 339376 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 1009765 31045075 ~ 31045205 (-) True XLOC_018178