RNA id: TCONS_00035800


Basic Information

Item Value
RNA id TCONS_00035800
length 810
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id XLOC_018156
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29687635 ~ 29691465 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGCAGACGTCATGAATTTCGGAAGGAAACGTTAAAAATGCAACGTTTTCTTTGTCCTTACCAAATTGTTTGGTGCACAGGGCTTGTAGAAAGGACCTGGGTGCCAACGAAAGCTGTGATGAGGGTTTTGTGCCCTCAGCATTCATCTCACAAACACAGACATAAGAGAAATGTACCTGGTCTAACGGAAGTGGCAGAGCCCAGTTCGCCCTGATTCAATCCCACACATCCACATCCACCTCTGGAGAGACTGTTGCTGCTTGCTGCTGTCCACTGCTGGTAAAAAACGGCAGTACAACACCCTACAGTCCGCCAAGACCAATTTGCAAATCCTACTACTGTGAAGGCttggctcatgaatattaatcagGTACCGTGACGTTCGGAGAGCTGATTGGGTGAAAAGCAGACGTTGAATAAAGCATGTGTAAACCAGTTTCCTCTTCAGAATGAGCAGCATGTAAAGATTGTAGCCAGTGACAGACAAAATCTTATCGCTGAGCCGCAGCCTGAAGAGTAGCAATAGGACAAGCCTGAAGGCTCTCAGAAGACATCTTCATTACTGAATAGAAGAGTTATGAGAGATCTTCAGCCTGCTGATCATCTCAGAAGAATGAGAGTAAGGAATGACATTTGTCATCTCCAGAACCCTCCTCTCCGGCAGCCTAAAACAAGCCCATTACAGTCCTGCAGCTGCAGAACAAACCCTCCTCTCCTGCAGCCTATGACAAGCCCATTACAGTCCTACAGCCGCGGGACACGGGTGAACAACAATGGAGATTTTGCAAGGCACTGATGAAGAACCTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035795 lncRNA downstream 61147 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA downstream 61651 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00035793 lncRNA downstream 157804 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00035778 lncRNA downstream 213140 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00036478 lncRNA downstream 258173 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00036856 lncRNA upstream 98477 29789942 ~ 29834538 (-) True XLOC_018158
TCONS_00036857 lncRNA upstream 235720 29927185 ~ 29933758 (-) True XLOC_018160
TCONS_00036479 lncRNA upstream 342093 30033558 ~ 30035310 (-) True XLOC_018161
TCONS_00036480 lncRNA upstream 400794 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00036858 lncRNA upstream 432025 30123490 ~ 30257999 (-) False XLOC_018163
TCONS_00035798 mRNA downstream 3852 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035797 mRNA downstream 3852 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035799 mRNA downstream 3881 29678458 ~ 29683754 (-) True XLOC_018155
TCONS_00035794 mRNA downstream 54128 29619820 ~ 29633507 (-) False XLOC_018154
TCONS_00035791 mRNA downstream 154625 29513470 ~ 29533010 (-) False XLOC_018153
TCONS_00035801 mRNA upstream 93462 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035802 mRNA upstream 93465 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035803 mRNA upstream 144811 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA upstream 144813 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035805 mRNA upstream 341163 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035788 other downstream 192200 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 637590 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 811761 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 845064 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1075313 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 681198 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 681742 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 682400 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 683221 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 1353610 31045075 ~ 31045205 (-) True XLOC_018178

Expression Profile

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