RNA id: TCONS_00035799


Basic Information

Item Value
RNA id TCONS_00035799
length 1412
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_018155
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29676874 ~ 29683783 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAACACGGCACATTGCACGCCTATCAGATTGAATGTAGTGATATAAACAGCGTGTTTTGACGATGGTGAAGTGCACGGTCCAGGGTTGCATAAACTTTAGCGATCTCAGACCGGAAGAGCAGCCGAATCGACCGCGCAAGAGATTCTTCAGGTTCCCAAAAGACAAGGCCCGAGTGAAAGTGTGGCTGGCGGCTTTACGGGACACTGAGCGCGAAATCACAGATCTTCATCGGATATGCGAAGACCATTTCCTCAGCCATCACATCACAGCCGACGGCATCAGCCCGGACGCGATCCCGATCATGCCCCCGCTGGATGGTCCGGTCGGCAACTGGAGCTCGTTTGAGGAGGAGCAGGACGAGCACACGGGGACACTCGAGGAGAGTGGAGCTGCTGCAGATGATGATCTTGAGGATGAAGACTTTGAGGATGACGAAGAATATGAGGATGAAGGCTACATTCCTGCAGATAACAATTCAAATAGCACAATTAGTAAACCCCAAGAACAGAGCGTCACTCAAAGTTTCAGACCTATCTTTAGCAGTCCCACCATTCTCCCACCTGTGAATGTAGCTGATGACGTATTCAACAGTAAAGCCCCGCATCGATCTGAAGTTGCTCTTGGACAACTGACTAAACGCTTCATGCAGCTCCTTAACGCAGCGCCGGAAGGAGTTCTCGATCTCAATGAGGTGTCGCGAAAACTAGGCGCACGAAAGAGGCGGGTGTATGACATCACCAGCGTGCTTGCAGGGATCCATCTACTCAAGAAGACTTCGAAAAACAAGATCCAGTGGATGAGTTCAACACCTCTCAGCTCTTTTGGGAGCCAGTGGAGCCCCAAGGCAAAAGCTGAGCTCCTTCATCTGAAGTCAACAGAGGAAGCCCTCGACTGGCTCATCAAGGACTGCGCCCAACAGCTCTTTGCCCTGACCGACCTCAAAGACAATGCTGAATATCCACTCATATTTCTAGCATTATTTTGTGATATACTATTGCTCTAGTACTTCTTTGCGTTGTTTTGGCCTTAACCCCTCATGTACCTCAGCTTATGTGACATATGAGGACATCTGTCAGATCGATGTTTTTAAGGACCAGACCATAATAGCCATTAGGGCCCCTGAGGAGACCAAACTAGAGGTGCCAACTCCCACTGAAGTAAGACATTTAACTTTTGAATCTTAGTTAAATCGGGAGGATGACTGCAGATCAAAGATGAAATATGTTCTcactgtgttattttatttacatacaaGGCATATATCTGTGTATGAATCTTTTCactgtatatttatgtatgtacagTGCACATTATAAATGAGTACATTCTCTTTTAAAAATTacttattattgtttaaaatattctATAATATGTTGATCCATTTTTCAGTCAATAAAGACTAGTTGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-513 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex.

Ensembl:

ensembl_id ENSDART00000130599

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035795 lncRNA downstream 51970 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA downstream 52474 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00035793 lncRNA downstream 148627 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00035778 lncRNA downstream 203963 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00036478 lncRNA downstream 248996 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00036855 lncRNA upstream 3881 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035800 lncRNA upstream 3881 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00036856 lncRNA upstream 106188 29789942 ~ 29834538 (-) True XLOC_018158
TCONS_00036857 lncRNA upstream 243431 29927185 ~ 29933758 (-) True XLOC_018160
TCONS_00036479 lncRNA upstream 349804 30033558 ~ 30035310 (-) True XLOC_018161
TCONS_00035794 mRNA downstream 44951 29619820 ~ 29633507 (-) False XLOC_018154
TCONS_00035791 mRNA downstream 145448 29513470 ~ 29533010 (-) False XLOC_018153
TCONS_00035792 mRNA downstream 145519 29513474 ~ 29532939 (-) False XLOC_018153
TCONS_00035790 mRNA downstream 172595 29502065 ~ 29505863 (-) True XLOC_018152
TCONS_00035789 mRNA downstream 179084 29495486 ~ 29499374 (-) True XLOC_018150
TCONS_00035801 mRNA upstream 101173 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035802 mRNA upstream 101176 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035803 mRNA upstream 152522 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA upstream 152524 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035805 mRNA upstream 348874 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035788 other downstream 183023 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 628413 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 802584 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 835887 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1066136 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 688909 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 689453 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 690111 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 690932 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 1361321 31045075 ~ 31045205 (-) True XLOC_018178

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_07101102_07105175.mRNA True 2281 mRNA 0.40 7 CI01000325 7100242 ~ 7105375 (-)