RNA id: TCONS_00036483


Basic Information

Item Value
RNA id TCONS_00036483
length 407
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_018163
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30123490 ~ 30258573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCTTCGCTGCCATTAACAGCGCCATCTGGCGTTTCGTATGAATGGATCACATTATAAAACGACGTTTTTCATCGTCGACTGTTTATCTTAACCTCGGAATAATTCGCGAAATTTGCACACGATTGAAGATTTAGCTTAGGAAATATTAAACTTCACGTAGCAGTCTAACTCGCTGTGCACAGGTTTGAACCTCAGCCTTTATGAAATAACGTGACATGGCAGTTTAACCTAAAGCTGACATCGCTCAACAGGGGCTGCTGGAGTGTCCTCCATCTGAGATCCAGGAAAGAGAGGCCATCCTCGCTCACCGGCTCTGTTCCCTTGTGTGAAATGAAAGGTTGGTGTCTTTTCAAAGCTGACAGCTGTCATAGGCACAGGCTGAGGAAGGTTAACCATCTCTCATAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036863 lncRNA downstream 15080 30205348 ~ 30238604 (-) False XLOC_018163
TCONS_00036862 lncRNA downstream 15634 30205348 ~ 30238050 (-) False XLOC_018163
TCONS_00036859 lncRNA downstream 52570 30146174 ~ 30201114 (-) False XLOC_018163
TCONS_00036481 lncRNA downstream 66500 30123501 ~ 30187184 (-) False XLOC_018163
TCONS_00036480 lncRNA downstream 154665 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00035808 lncRNA upstream 109180 30367154 ~ 30370927 (-) True XLOC_018164
TCONS_00036866 lncRNA upstream 207528 30465502 ~ 30466038 (-) True XLOC_018170
TCONS_00036867 lncRNA upstream 542894 30800868 ~ 30806474 (-) True XLOC_018171
TCONS_00036868 lncRNA upstream 644583 30902557 ~ 30911614 (-) True XLOC_018173
TCONS_00036869 lncRNA upstream 707909 30965883 ~ 30970932 (-) False XLOC_018176
TCONS_00035805 mRNA downstream 218358 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035803 mRNA downstream 389154 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA downstream 389294 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035802 mRNA downstream 466474 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035801 mRNA downstream 466492 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035806 mRNA upstream 97462 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA upstream 103179 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035809 mRNA upstream 114378 30372352 ~ 30377221 (-) False XLOC_018165
TCONS_00035810 mRNA upstream 114379 30372353 ~ 30376433 (-) True XLOC_018165
TCONS_00035815 mRNA upstream 636119 30894093 ~ 30901034 (-) False XLOC_018172
TCONS_00035788 other downstream 758249 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 1203639 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 1377810 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 1411113 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1641362 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 114689 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 115233 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 115891 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 116712 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 787101 31045075 ~ 31045205 (-) True XLOC_018178