RNA id: TCONS_00036869


Basic Information

Item Value
RNA id TCONS_00036869
length 1989
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_018176
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30965883 ~ 30973173 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCACTCTTCTGGCTTTAATCTACTAGATGGCGTTATGGAAAACTCCACAGGTCCTCTCCTCCTCCTCTGTCTGAGAAATGAAACACATGAGGGACTGACGGTGGGCCTGGCCGTGGCTCAAACGCACCGCAGGTGGAATATTTGTGTTATTGTGGAAGAATTCACACTGCTCTCCAAGGTTGCTCTTCATTCCTGAATAGATGTTTTCAGTGGTGAAACCCTAGAGTGCAAGGAACAGTGTAACAATTACAGGAGTATCTGTACTGCAGATCTTGTGAGCTCATTCACATGGTGCTGATTGCTGAATGAAAGGAGAAACTCACTGTGATGAAGGACAAAGAGCTTCCCTCCTTCATGTTTGTTGGAGTTTGTGACATCAGAGCAAGCACTTTAATAACACTCACACTAATCAGATCCTGCAGTTCAGCGATACCTCTAATACTGCTCAGATGGACGGCAGAGAAAAACAGACGCAGCGAAAAAAGACAGAGAAAACAtctggacagacagacagttgcGTAGCAGAGACATTCATCTTATCCGCATCCTTGCACGGTCGTCAGActtgaattatattttaatgctttCCATTGGGATGCGTCCCCGTGCCAGAATTATCATCATGTGTGCTTCGACACAAGGAGACAAACATTGCAGCCAACAAGATAGAGCTGCGATGGGAGAAGGAGAGGAATGGTGGAGAGACAGAAGAACTGACACAAAACTGAGGTTAGCACAATGCTACCTTACATCTGtagaaaaggtttaaaaaaaaacatccgccATATGCATCTAGATATGGATGAATGATAATAGCATATGGCAAAGAACTCATGCACAATTTATTGTACAATACAATAACCAAATGCATATACGGacgaatatgttttttttttttctcccgtCTCCTGGCTGTGGTGCGGTGtcattaaatttgcaaaaattccATGCAGAAATAACATCTTGAAAGCTCATTAAGTGTCAGTCAAGTCATAAGCTACATGGAAAAATATAAAAGTCGCTCTCATTCACTTAGCCCCACGGCAACAGAACTTCCAAAGTAATATACAGCATAATGGCTTATTAATAACCCTGCATTAAATAATATCCTGAGCTGAATCTTCAGAACGCAGTGTGACTGAACAGGTCTCTTTGAACATGCCAACACCTTCTGAAATATAaatcaaaaaaaaagaagaagagaagGCCAAAAGAGTTCAGtctgcttctcttgattttcacCAGCAGATTATCTCCACCTGTTCAGTTCACAAGCTGCTCTTTATAACTATTCATAGTATGTTTGACATTTGTTAATCCACGCTAATAATTGCTTTTAATTAAAGAGTAATCACAGTAATTGTAAACATTTCAGTCACCTCTGGAGATCTGAACAGCTGTTAGAAATTAAAATTTGACAATTTAAGCCCATTGTGGCACAAACTAAACATGTTTCAGAAGTCTTTGGGAATataatcaccccccccccccttcttttCAGTACATAATGATTGCAGCATGGGTTTTAACACTTTGTCATTTCATGCACATTACAGTAACTTCATCAAGAATGTTTAATTGCAAATATATTCCCCTTGGGCTAGTCCCAGTACGGGACAAATACTTAGTagctaaaaaaatacaaagatCATTTTCACAACACCATGTTCATTCATTTCTTCACCtgcacacgcgtcaagcaactgaagcagagtaAACAAACAGAGGTTTATCAAAAGcattttatggatatttttttatacattggaCATTAGGAAGGAAAAtctatctgcactgtaaaaacaaatccgAAATTTTACGGTTTaattccggcagctggggtgccggaaaaaagtaaaataacaaccgttaaattacagaaatttactgtaacaAAACGCAtatcaaattacagaaatttaatagAAATTTGAATTtagggaaatttctgtaatttgataTCCGTTATTATATCCGTAAAATTAcg

Function

GO:

id name namespace
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036868 lncRNA downstream 54269 30902557 ~ 30911614 (-) True XLOC_018173
TCONS_00036867 lncRNA downstream 159409 30800868 ~ 30806474 (-) True XLOC_018171
TCONS_00036866 lncRNA downstream 499845 30465502 ~ 30466038 (-) True XLOC_018170
TCONS_00035808 lncRNA downstream 594956 30367154 ~ 30370927 (-) True XLOC_018164
TCONS_00036865 lncRNA downstream 707884 30212776 ~ 30257999 (-) False XLOC_018163
TCONS_00036874 lncRNA upstream 31256 31002188 ~ 31031494 (-) False XLOC_018177
TCONS_00036875 lncRNA upstream 339994 31310926 ~ 31346581 (-) True XLOC_018181
TCONS_00036876 lncRNA upstream 586936 31557868 ~ 31744506 (-) True XLOC_018183
TCONS_00036877 lncRNA upstream 965092 31936024 ~ 31967211 (-) False XLOC_018185
TCONS_00036485 lncRNA upstream 1010520 31981452 ~ 31983851 (-) False XLOC_018185
TCONS_00035820 mRNA downstream 27637 30931414 ~ 30938246 (-) False XLOC_018175
TCONS_00035821 mRNA downstream 27699 30934655 ~ 30938184 (-) True XLOC_018175
TCONS_00035819 mRNA downstream 34737 30926212 ~ 30931146 (-) True XLOC_018174
TCONS_00035818 mRNA downstream 34744 30922595 ~ 30931139 (-) False XLOC_018174
TCONS_00035817 mRNA downstream 45527 30902138 ~ 30920356 (-) False XLOC_018173
TCONS_00035822 mRNA upstream 31256 31002188 ~ 31067306 (-) False XLOC_018177
TCONS_00035823 mRNA upstream 36596 31007528 ~ 31018569 (-) True XLOC_018177
TCONS_00035825 mRNA upstream 101960 31072892 ~ 31075972 (-) True XLOC_018179
TCONS_00035826 mRNA upstream 261991 31232923 ~ 31252809 (-) False XLOC_018180
TCONS_00035827 mRNA upstream 261994 31232926 ~ 31238313 (-) False XLOC_018180
TCONS_00035814 other downstream 590977 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035813 other downstream 591799 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035812 other downstream 592456 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035811 other downstream 593000 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035788 other downstream 1470448 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035824 other upstream 74143 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035840 other upstream 1039078 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035855 other upstream 1489343 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035856 other upstream 1678911 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035866 other upstream 2500289 33471221 ~ 33475485 (-) True XLOC_018202

Expression Profile

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