RNA id: TCONS_00035821


Basic Information

Item Value
RNA id TCONS_00035821
length 1157
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_018175
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30931414 ~ 30938246 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCACACGCTGGTCATGGCGGACGGGCTACCTTTCGTCTAAATAAAAAACGCAACATTTTCCCTATCCCGAgaactatattaataaaaataactctTTCGTATCTCACATTGGAAGACATACGTGTCATTCTGGTCGAGGCGAACCGGCTCTGAGATCAGAATGACCAATGAAGAACCTCTCCCGAAGAAGGTTCGCCTTAGTGAATCTGACATGAAGACGCTGACTCGAGAGGAGCTCTGTACCAGGTGGAAACAGCATGAAACTTACGTCCAGATGCTTGAGGCGAAATATGCTGATTTAAACTCCAATGACGTGACAGGCCTGAAAGAGTCTGAGGAGAAGTTGAAGCAGCAACAGCAGGAATCTGCACGCAGAGAGAACATTCTGGTGATGAGGCTTGCTACAAAAGAGCAGGAAATGCAAGAGTGtacaACCCAAATCCAGTACCTGAAGCAAGTCCAGCAACCGAGTGCAGCTCAGCTGAGATCGTCCATGGTGGACCCAGCCATCAACTTatttttcctcaaaatgaaggcTGAACTGGAACAGACTAAAGACAAACTGGAGCAAGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCTGATAGGTAAACTAAAATAACTCCCCCCTCCAAACAAAAAGTCAAGACTTTCCTGATTCACCCCCACCTTCTCCTCTGCAGGAGTGCAGATAATGGTGGGGGAAGACTGAAATGTGTTGCTCACAACGAGACTCAGACTTTAAAGCAAAAAAGCTCAGAACAAaagacatttttcttttgtattgCCCTGCTATTACACATACCGTAATGTAAAATCAGAACAGAACACGGCAGTTTGGTCAGGTGACACTTTTGTTTCAGCTCTTTCTCTCCCCCCCACACCCCTCATGGTACAGAAGCCTGAAGGAATCGGGACTGTTCCTGAAGAGGTGGTCACGTCGGAAACTCAGCCCGTGTTAGAAAGCTTCCTGTAACAAATAAGGCGGCCTATGAAAGACTTGAGCAAAGCGTTGGCTCTGGAGCTGGTTGAACTGTAGTTTGCAGGTCACTGATTGAACATTTAAAACATGACATGGCCCAACTAAATGTGTTGCAGAGGAAAATGCCCCCATATAAACTCCATCATAGATGCTTTGAGACTCTGGTTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0007275 multicellular organism development biological_process
GO:0007049 cell cycle biological_process
GO:0080009 mRNA methylation biological_process
GO:0008380 RNA splicing biological_process
GO:0036396 RNA N6-methyladenosine methyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-5990 Acts upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Predicted to be active in nucleus. Is expressed in head. Orthologous to human WTAP (WT1 associated protein).

Ensembl:

ensembl_id ENSDART00000147359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036868 lncRNA downstream 23041 30902557 ~ 30911614 (-) True XLOC_018173
TCONS_00036867 lncRNA downstream 128181 30800868 ~ 30806474 (-) True XLOC_018171
TCONS_00036866 lncRNA downstream 468617 30465502 ~ 30466038 (-) True XLOC_018170
TCONS_00035808 lncRNA downstream 563728 30367154 ~ 30370927 (-) True XLOC_018164
TCONS_00036483 lncRNA downstream 676681 30253684 ~ 30257974 (-) True XLOC_018163
TCONS_00036869 lncRNA upstream 27699 30965883 ~ 30970932 (-) False XLOC_018176
TCONS_00036870 lncRNA upstream 27699 30965883 ~ 30970967 (-) False XLOC_018176
TCONS_00036871 lncRNA upstream 27699 30965883 ~ 30971242 (-) False XLOC_018176
TCONS_00036872 lncRNA upstream 27699 30965883 ~ 30972358 (-) False XLOC_018176
TCONS_00036873 lncRNA upstream 27699 30965883 ~ 30973173 (-) False XLOC_018176
TCONS_00035819 mRNA downstream 3509 30926212 ~ 30931146 (-) True XLOC_018174
TCONS_00035818 mRNA downstream 3516 30922595 ~ 30931139 (-) False XLOC_018174
TCONS_00035817 mRNA downstream 14299 30902138 ~ 30920356 (-) False XLOC_018173
TCONS_00035815 mRNA downstream 33621 30894093 ~ 30901034 (-) False XLOC_018172
TCONS_00035822 mRNA upstream 64004 31002188 ~ 31067306 (-) False XLOC_018177
TCONS_00035823 mRNA upstream 69344 31007528 ~ 31018569 (-) True XLOC_018177
TCONS_00035825 mRNA upstream 134708 31072892 ~ 31075972 (-) True XLOC_018179
TCONS_00035826 mRNA upstream 294739 31232923 ~ 31252809 (-) False XLOC_018180
TCONS_00035827 mRNA upstream 294742 31232926 ~ 31238313 (-) False XLOC_018180
TCONS_00035814 other downstream 559749 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035813 other downstream 560571 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035812 other downstream 561228 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035811 other downstream 561772 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035788 other downstream 1439220 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035824 other upstream 106891 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035840 other upstream 1071826 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035855 other upstream 1522091 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035856 other upstream 1711659 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035866 other upstream 2533037 33471221 ~ 33475485 (-) True XLOC_018202

Expression Profile

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